# HG changeset patch
# User stef
# Date 1410432027 14400
# Node ID f34be89e96749545afd73851f1541aa17050ce66
# Parent  4d30096403143cacee5f1b114cbd7e1873ba35aa
Uploaded

diff -r 4d3009640314 -r f34be89e9674 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Sep 11 05:16:59 2014 -0400
+++ b/tool_dependencies.xml	Thu Sep 11 06:40:27 2014 -0400
@@ -1,8 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
     
+    <!-- PACKAGES -->
     <package name="R" version="3.0.3">
-        <repository changeset_revision="9ff23e0b280b" name="package_r_3_0_3" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="9ff23e0b280b" name="package_r_3_0_3" owner="iuc" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" />
         <readme>Let's see where this msg appears...R</readme>
     </package>
     
@@ -10,18 +11,23 @@
         <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" />
         <readme>Let's see where this msg appears...samtools</readme>
     </package>
+
+    <package name="bcftools" version="2">
+        <repository changeset_revision="5f9ba601748e" name="bcftools" owner="iuc" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <readme>Let's see where this msg appears...bcftools</readme>
+    </package>
     
     <package name="snpeff" version="3.4">
-        <repository changeset_revision="7fb1061d905a" name="package_snpeff_3_4" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="7fb1061d905a" name="package_snpeff_3_4" owner="jjohnson" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" />
         <readme>Let's see where this msg appears...snpeff</readme>
     </package>
     
     <package name="varscan" version="2">
-        <repository changeset_revision="f82940004c84" name="varscan_version_2" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="f82940004c84" name="varscan_version_2" owner="devteam" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" />
         <readme>Let's see where this msg appears...varscan</readme>
     </package>
     
-    <!-- TXT -->
+    <!-- ENV -->
     <set_environment version="1.0">
         <environment_variable action="set_to" name="TOOL_DIR">$REPOSITORY_INSTALL_DIR</environment_variable>
         <readme>Let's see where this msg appears...ENV VAR</readme>