Mercurial > repos > stef > falco
changeset 3:4d3009640314 draft
Uploaded
author | stef |
---|---|
date | Thu, 11 Sep 2014 05:16:59 -0400 |
parents | 9285f791716d |
children | f34be89e9674 |
files | falco.sh |
diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/falco.sh Thu Sep 11 05:11:11 2014 -0400 +++ b/falco.sh Thu Sep 11 05:16:59 2014 -0400 @@ -75,20 +75,20 @@ ## running analysis ## ---------- echo "Starting VcAn" -$TOOLDIR/falco_new/amplicon-VcAn-TSACP.sh $bam_file $bam_base +$TOOLDIR/falco/amplicon-VcAn-TSACP.sh $bam_file $bam_base #$TOOLDIR/falco/amplicon-AlVcAn-TSACP.sh ## this contains more echo "Starting amplicon-Report" -$TOOLDIR/falco_new/amplicon-Report.sh $bam_base +$TOOLDIR/falco/amplicon-Report.sh $bam_base echo "Starting QC" -$TOOLDIR/falco_new/amplicon-QC.sh $bam_file +$TOOLDIR/falco/amplicon-QC.sh $bam_file #echo "Starting plots.R" #$TOOLDIR/falco/misc/plots.R $bam_base.qc.ann.txt $bam_base.qc.targets.txt $bam_base.pdf echo "Starting mkHtmlReport" -$TOOLDIR/falco_new/misc/mkHtmlReport.pl ./ ./ +$TOOLDIR/falco/misc/mkHtmlReport.pl ./ ./