Mercurial > repos > stef > falco
changeset 50:4965026bb54e draft
Uploaded
| author | stef |
|---|---|
| date | Wed, 31 Dec 2014 06:03:28 -0500 |
| parents | b4e543d81a98 |
| children | 9c4dd45fa403 |
| files | falco-call.xml falco/data/HCT-116/HCT116.bam falco/data/HCT-116/HCT116.bam.bai tool-data/fasta_index.loc.sample tool_data_table_conf.xml.sample |
| diffstat | 5 files changed, 34 insertions(+), 4 deletions(-) [+] |
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--- a/falco-call.xml Tue Dec 30 06:27:20 2014 -0500 +++ b/falco-call.xml Wed Dec 31 06:03:28 2014 -0500 @@ -4,10 +4,8 @@ <requirement type="package" version="0.1.19">samtools</requirement> <requirement type="package" version="3.1.0">R</requirement> - <!-- - <requirement type="package" version="2">bcftools</requirement> - <requirement type="set_environment">TOOL_DIR</requirement> - --> + <!-- <requirement type="package" version="2">bcftools</requirement> --> + <!-- <requirement type="set_environment">TOOL_DIR</requirement> --> </requirements>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/fasta_index.loc.sample Wed Dec 31 06:03:28 2014 -0500 @@ -0,0 +1,26 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory with indexed fasta files. The _index.loc file has +#this format (longer white space characters are TAB characters): +# +#<unique_build_id> <dbkey> <display_name> <file_path> +# +#So, for example, if you had phiX indexed stored in +#/example/path/ +#then the _index.loc entry would look like this: +# +#phiX174 phiX phiX Pretty /example/path/phiX.fa +# +#and your /example/path/ directory +#would contain phiX.fa.* files: +# +# phiX.fa.fai +# phiX.fa.dict +# +#Your _index.loc file should include an entry per line for each +#index set you have stored. For example: +# +#phiX174 phiX phiX174 /path/to/phiX.fa +#hg18 hg18 hg18 Full /path/to/hg18full.fa +#hg19 hg19 hg19 /path/to/hg19.fa +#...etc... +#