# HG changeset patch
# User stef
# Date 1420023808 18000
# Node ID 4965026bb54e753068263e8b7bac94e04cae5950
# Parent b4e543d81a98b74c44f9f632afac5dc1d433e2ce
Uploaded
diff -r b4e543d81a98 -r 4965026bb54e falco-call.xml
--- a/falco-call.xml Tue Dec 30 06:27:20 2014 -0500
+++ b/falco-call.xml Wed Dec 31 06:03:28 2014 -0500
@@ -4,10 +4,8 @@
samtools
R
-
+
+
diff -r b4e543d81a98 -r 4965026bb54e falco/data/HCT-116/HCT116.bam
Binary file falco/data/HCT-116/HCT116.bam has changed
diff -r b4e543d81a98 -r 4965026bb54e falco/data/HCT-116/HCT116.bam.bai
Binary file falco/data/HCT-116/HCT116.bam.bai has changed
diff -r b4e543d81a98 -r 4965026bb54e tool-data/fasta_index.loc.sample
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/fasta_index.loc.sample Wed Dec 31 06:03:28 2014 -0500
@@ -0,0 +1,26 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory with indexed fasta files. The _index.loc file has
+#this format (longer white space characters are TAB characters):
+#
+#
+#
+#So, for example, if you had phiX indexed stored in
+#/example/path/
+#then the _index.loc entry would look like this:
+#
+#phiX174 phiX phiX Pretty /example/path/phiX.fa
+#
+#and your /example/path/ directory
+#would contain phiX.fa.* files:
+#
+# phiX.fa.fai
+# phiX.fa.dict
+#
+#Your _index.loc file should include an entry per line for each
+#index set you have stored. For example:
+#
+#phiX174 phiX phiX174 /path/to/phiX.fa
+#hg18 hg18 hg18 Full /path/to/hg18full.fa
+#hg19 hg19 hg19 /path/to/hg19.fa
+#...etc...
+#
diff -r b4e543d81a98 -r 4965026bb54e tool_data_table_conf.xml.sample
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample Wed Dec 31 06:03:28 2014 -0500
@@ -0,0 +1,6 @@
+
+
+ value, dbkey, name, path
+
+
+