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2
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="softsearch" version="2.4">
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4 <install version="2.4">
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5 <actions>
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6 <action type="download_by_url">wget https://s3-us-west-2.amazonaws.com/mayo-bic-tools/softsearch/Softsearch2.4.tar.gz
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7 </action>
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8 <action type="shell_command">tar xvzf Softsearch2.4.tar.gz</action>
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9 <action type="shell_command">cd 2.4/</action>
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10 <action type="shell_command">perl ./install.pl --prefix=$PWD</action>
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11 <action type="shell_command">export PERL5LIB=$PERL5LIB:$PWD:$PWD/lib</action>
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12 <action type="shell_command">perl script/SoftSearch.pl</action>
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13 <action type="set_environment">
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 </package>
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19 </tool_dependency>
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