Mercurial > repos > shirish > ss_tool

changeset 2:b0eefbf02f16 draft

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Uploaded
author shirish
date Tue, 03 Jun 2014 01:44:20 -0400
parents bcc7bfd10fb5
children b0a7b6b90740
files tool_dependencies.xml
diffstat 1 files changed, 19 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Jun 03 01:44:20 2014 -0400
@@ -0,0 +1,19 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="softsearch" version="2.4">
+        <install version="2.4">
+            <actions>
+		<action type="download_by_url">wget https://s3-us-west-2.amazonaws.com/mayo-bic-tools/softsearch/Softsearch2.4.tar.gz
+</action>
+		<action type="shell_command">tar xvzf Softsearch2.4.tar.gz</action>
+                <action type="shell_command">cd 2.4/</action>
+                <action type="shell_command">perl ./install.pl --prefix=$PWD</action>
+                <action type="shell_command">export PERL5LIB=$PERL5LIB:$PWD:$PWD/lib</action>
+		<action type="shell_command">perl script/SoftSearch.pl</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        </package>
+</tool_dependency>