comparison tool_dependencies.xml @ 2:b0eefbf02f16 draft

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2:b0eefbf02f16

<?xml version="1.0"?>
<tool_dependency>
    <package name="softsearch" version="2.4">
        <install version="2.4">
            <actions>
		<action type="download_by_url">wget https://s3-us-west-2.amazonaws.com/mayo-bic-tools/softsearch/Softsearch2.4.tar.gz
</action>
		<action type="shell_command">tar xvzf Softsearch2.4.tar.gz</action>
                <action type="shell_command">cd 2.4/</action>
                <action type="shell_command">perl ./install.pl --prefix=$PWD</action>
                <action type="shell_command">export PERL5LIB=$PERL5LIB:$PWD:$PWD/lib</action>
		<action type="shell_command">perl script/SoftSearch.pl</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        </package>
</tool_dependency>