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annotate tool_dependencies.xml @ 42:ff10e8784d4e draft default tip

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planemo upload commit 9e980862c8b763cf3dd0209be49f0d2d75a90614-dirty
author scottx611x
date Tue, 22 Nov 2016 14:21:59 -0500
parents b9f3715c04fe
children
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="setuptools" version="19.0">
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4 <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="hdf5" version="1.8.12">
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7 <repository changeset_revision="b6d5355e3754" name="package_hdf5_1_8_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="numpy" version="1.9">
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10 <repository changeset_revision="1e2b7e63dec2" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="scipy" version="0.16">
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13 <repository changeset_revision="bb3303595443" name="package_python_2_7_scipy_0_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="pandas" version="0.16">
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16 <repository changeset_revision="2d16b733b9b6" name="package_python_2_7_pandas_0_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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17 </package>
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18 <package name="cooler" version="0.5.3">
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19 <install version="1.0">
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20 <actions>
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21 <action md5="f95024c8c201df01fbaa2de10d81edd3" type="download_by_url">https://pypi.python.org/packages/64/6e/8ed3ba753e269e0cb393ce8898292e4540a763f155bf6cf855b454dbbd2a/cooler-0.5.3.tar.gz</action>
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22 <action md5="ec476211bd1de3f5ac150544189b0bf4" type="download_by_url">https://pypi.python.org/packages/22/82/64dada5382a60471f85f16eb7d01cc1a9620aea855cd665609adf6fdbb0d/h5py-2.6.0.tar.gz</action>
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23 <action type="set_environment_for_install">
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24 <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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25 <package name="setuptools" version="19.0" />
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26 </repository>
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27 <repository changeset_revision="b6d5355e3754" name="package_hdf5_1_8_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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28 <package name="hdf5" version="1.8.12" />
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29 </repository>
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30 <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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31 <package name="setuptools" version="19.0" />
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32 </repository>
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33 <repository changeset_revision="1e2b7e63dec2" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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34 <package name="setuptools" version="19.0" />
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35 </repository>
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36 <repository changeset_revision="bb3303595443" name="package_python_2_7_scipy_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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37 <package name="scipy" version="0.16" />
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38 </repository>
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39 <repository changeset_revision="2d16b733b9b6" name="package_python_2_7_pandas_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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40 <package name="pandas" version="0.16" />
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41 </repository>
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42 </action>
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43 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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44 <action type="shell_command">
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45 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
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46 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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47 </action>
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48 <action type="set_environment">
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49 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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50 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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51 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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52 </action>
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53 </actions>
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54 </install>
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55 </package>
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56 </tool_dependency>