Mercurial > repos > scottx611x > cooler_convert

diff tool_dependencies.xml @ 39:30ae5142a542 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 9e980862c8b763cf3dd0209be49f0d2d75a90614-dirty
author scottx611x
date Mon, 21 Nov 2016 19:35:49 -0500
parents b35821db18e8
children b9f3715c04fe
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Nov 21 17:43:40 2016 -0500
+++ b/tool_dependencies.xml	Mon Nov 21 19:35:49 2016 -0500
@@ -2,7 +2,22 @@
 <tool_dependency>
 	<package name="setuptools" version="19.0">
         <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package> 
+	</package>
+    <package name="hdf5" version="1.8.12">
+	    <repository changeset_revision="b6d5355e3754" name="package_hdf5_1_8_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+	</package>
+    <package name="numpy" version="1.9">
+		<repository changeset_revision="1e2b7e63dec2" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+	</package>
+	<package name="scipy" version="0.16">        
+		<repository changeset_revision="bb3303595443" name="package_python_2_7_scipy_0_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+	</package>
+    <package name="pandas" version="0.16">              
+	    <repository changeset_revision="2d16b733b9b6" name="package_python_2_7_pandas_0_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+	</package> 	
+	<package name="h5py" version="2.5.0">
+		<repository changeset_revision="3b17bd6fa3ae" name="package_h5py_2_5_0" owner="sauria" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 
+	</package>
 	<package name="cooler" version="0.5.3">
         <install version="1.0">
             <actions>
@@ -10,7 +25,25 @@
                 <action type="set_environment_for_install">
                     <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="setuptools" version="19.0" />
+					</repository>
+				    <repository changeset_revision="b6d5355e3754" name="package_hdf5_1_8_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="hdf5" version="1.8.12" />
                     </repository>
+				    <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="setuptools" version="19.0" />
+                    </repository>
+					<repository changeset_revision="1e2b7e63dec2" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="setuptools" version="19.0" />
+                    </repository>
+					<repository changeset_revision="bb3303595443" name="package_python_2_7_scipy_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="scipy" version="0.16" />
+                    </repository>
+					<repository changeset_revision="2d16b733b9b6" name="package_python_2_7_pandas_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="pandas" version="0.16" />
+                    </repository>
+					<repository changeset_revision="3b17bd6fa3ae" name="package_h5py_2_5_0" owner="sauria" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="h5py" version="2.5.0" />
+                    </repository>	
                 </action>
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
                 <action type="shell_command">