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planemo upload commit 9e980862c8b763cf3dd0209be49f0d2d75a90614-dirty
author scottx611x
date Tue, 22 Nov 2016 14:21:59 -0500
parents b9f3715c04fe
children
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<?xml version="1.0"?>
<tool_dependency>
	<package name="setuptools" version="19.0">
        <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
	</package>
    <package name="hdf5" version="1.8.12">
	    <repository changeset_revision="b6d5355e3754" name="package_hdf5_1_8_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
	</package>
    <package name="numpy" version="1.9">
		<repository changeset_revision="1e2b7e63dec2" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
	</package>
	<package name="scipy" version="0.16">        
		<repository changeset_revision="bb3303595443" name="package_python_2_7_scipy_0_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
	</package>
    <package name="pandas" version="0.16">              
	    <repository changeset_revision="2d16b733b9b6" name="package_python_2_7_pandas_0_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
	</package> 	
	<package name="cooler" version="0.5.3">
        <install version="1.0">
            <actions>
				<action md5="f95024c8c201df01fbaa2de10d81edd3" type="download_by_url">https://pypi.python.org/packages/64/6e/8ed3ba753e269e0cb393ce8898292e4540a763f155bf6cf855b454dbbd2a/cooler-0.5.3.tar.gz</action>
				<action md5="ec476211bd1de3f5ac150544189b0bf4" type="download_by_url">https://pypi.python.org/packages/22/82/64dada5382a60471f85f16eb7d01cc1a9620aea855cd665609adf6fdbb0d/h5py-2.6.0.tar.gz</action>
                <action type="set_environment_for_install">
					<repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="setuptools" version="19.0" />
					</repository>
				    <repository changeset_revision="b6d5355e3754" name="package_hdf5_1_8_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="hdf5" version="1.8.12" />
                    </repository>
				    <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="setuptools" version="19.0" />
                    </repository>
					<repository changeset_revision="1e2b7e63dec2" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="setuptools" version="19.0" />
                    </repository>
					<repository changeset_revision="bb3303595443" name="package_python_2_7_scipy_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="scipy" version="0.16" />
                    </repository>
					<repository changeset_revision="2d16b733b9b6" name="package_python_2_7_pandas_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="pandas" version="0.16" />
                    </repository>
                </action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">
                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
					<environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
				</action>
		    </actions>
        </install>
	</package>
</tool_dependency>