Mercurial > repos > sanbi-uwc > data_manager_rnastar_index_builder

annotate data_manager_conf.xml @ 10:61084615bb57 draft

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planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit ab936cfb63040f3e5d34d35c1e2b968698fd2caa
author sanbi-uwc
date Mon, 15 Feb 2016 03:21:58 -0500
parents ccb7ce1ad9b3
children 6096741e8d83
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2883a3b7dc56 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
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1 <?xml version="1.0" encoding="utf-8" ?>
2883a3b7dc56 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
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2 <data_managers>
2883a3b7dc56 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
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3 <data_manager tool_file="data_manager/rnastar_index_builder.xml" id="rnastar_index_builder" version="0.0.1">
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ccb7ce1ad9b3 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit fbd0bba2d1b19756849695e02e17d86076ca74a1
sanbi-uwc
parents: 8
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4 <data_table name="rnastar_indexes">
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01e77b5e12c5 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
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5 <output>
01e77b5e12c5 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
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6 <column name="value" />
01e77b5e12c5 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
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7 <column name="dbkey" />
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61084615bb57 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit ab936cfb63040f3e5d34d35c1e2b968698fd2caa
sanbi-uwc
parents: 9
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8 <column name="path" output_ref="out_file">
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01e77b5e12c5 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
parents: 0
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9 <move type="directory" relative_symlinks="True">
01e77b5e12c5 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
parents: 0
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10 <!-- no need to set source, gets taken from out_dir.extra_files_path -->
01e77b5e12c5 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
parents: 0
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11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index/${value}</target>
01e77b5e12c5 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
parents: 0
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12 </move>
01e77b5e12c5 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
parents: 0
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13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/{$dbkey}/rnastar_index/${value}/${path}</value_translation>
01e77b5e12c5 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
parents: 0
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14 <value_translation type="function">abspath</value_translation>
01e77b5e12c5 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
parents: 0
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15 </column>
01e77b5e12c5 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
parents: 0
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16 </output>
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2883a3b7dc56 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
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17 </data_table>
2883a3b7dc56 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
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18 </data_manager>
2883a3b7dc56 planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
sanbi-uwc
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19 </data_managers>