Mercurial > repos > sanbi-uwc > data_manager_rnastar_index_builder
changeset 2:01e77b5e12c5 draft
planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
| author | sanbi-uwc |
|---|---|
| date | Mon, 08 Feb 2016 03:50:42 -0500 |
| parents | 316b24a15236 |
| children | d00829775046 |
| files | data_manager_conf.xml |
| diffstat | 1 files changed, 12 insertions(+), 10 deletions(-) [+] |
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--- a/data_manager_conf.xml Mon Feb 08 03:24:18 2016 -0500 +++ b/data_manager_conf.xml Mon Feb 08 03:50:42 2016 -0500 @@ -2,16 +2,18 @@ <data_managers> <data_manager tool_file="data_manager/rnastar_index_builder.xml" id="rnastar_index_builder" version="0.0.1"> <data_table name="rnastar_indexes"> - <column name="value" /> - <column name="dbkey" /> - <column name="path" output_ref="out_dir"> - <move type="directory" relative_symlinks="True"> - <!-- no need to set source, gets taken from out_dir.extra_files_path --> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index/${value}</target> - </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/{$dbkey}/rnastar_index/${value}/${path}</value_translation> - <value_translation type="function">abspath</value_translation> - </column> + <output> + <column name="value" /> + <column name="dbkey" /> + <column name="path" output_ref="out_dir"> + <move type="directory" relative_symlinks="True"> + <!-- no need to set source, gets taken from out_dir.extra_files_path --> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index/${value}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/{$dbkey}/rnastar_index/${value}/${path}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> </data_table> </data_manager> </data_managers> \ No newline at end of file