Mercurial > repos > sanbi-uwc > data_manager_rnastar_index_builder

diff data_manager_conf.xml @ 0:2883a3b7dc56 draft

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planemo upload for repository https://github.com/pvanheus/data_manager_rnastar_index_builder commit 265fa1966ea606ebccea8c2865043c014959c10c-dirty
author sanbi-uwc
date Mon, 08 Feb 2016 03:23:34 -0500
parents
children 01e77b5e12c5
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Mon Feb 08 03:23:34 2016 -0500
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="utf-8" ?>
+<data_managers>
+    <data_manager tool_file="data_manager/rnastar_index_builder.xml" id="rnastar_index_builder" version="0.0.1">
+        <data_table name="rnastar_indexes">
+            <column name="value" />
+            <column name="dbkey" />
+            <column name="path" output_ref="out_dir">
+                <move type="directory" relative_symlinks="True">
+                    <!-- no need to set source, gets taken from out_dir.extra_files_path -->
+                    <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index/${value}</target>
+                </move>
+                <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/{$dbkey}/rnastar_index/${value}/${path}</value_translation>
+                <value_translation type="function">abspath</value_translation>
+            </column>
+        </data_table>
+    </data_manager>
+</data_managers>
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