Mercurial > repos > sanbi-uwc > data_manager_novoalign_index_builder

annotate data_manager_conf.xml @ 4:1b70cac31576 draft

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planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 7a4e8e63f25a6cee79940d3d353599a3abc90bf4
author sanbi-uwc
date Fri, 04 Mar 2016 02:56:48 -0500
parents 4d67344bdea7
children db05a35d61ee
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4d67344bdea7 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 1f4717cce284465cddbb221a5ca4d1f601c14f84
sanbi-uwc
parents: 0
diff changeset
1 <?xml version="1.0" encoding="utf-8" ?>
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85fbd52dbb36 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit d51fdc6291de173e829a839e98c6c3ae367d84bf
sanbi-uwc
parents:
diff changeset
2 <data_managers>
85fbd52dbb36 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit d51fdc6291de173e829a839e98c6c3ae367d84bf
sanbi-uwc
parents:
diff changeset
3 <data_manager tool_file="data_manager/novoalign_index_builder.xml" id="novoalign_index_builder" version="0.0.1">
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4d67344bdea7 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 1f4717cce284465cddbb221a5ca4d1f601c14f84
sanbi-uwc
parents: 0
diff changeset
4 <data_table name="novocraft_index">
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85fbd52dbb36 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit d51fdc6291de173e829a839e98c6c3ae367d84bf
sanbi-uwc
parents:
diff changeset
5 <output>
85fbd52dbb36 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit d51fdc6291de173e829a839e98c6c3ae367d84bf
sanbi-uwc
parents:
diff changeset
6 <column name="value" />
85fbd52dbb36 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit d51fdc6291de173e829a839e98c6c3ae367d84bf
sanbi-uwc
parents:
diff changeset
7 <column name="dbkey" />
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1b70cac31576 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 7a4e8e63f25a6cee79940d3d353599a3abc90bf4
sanbi-uwc
parents: 1
diff changeset
8 <column name="path" output_ref="out_dir">
1b70cac31576 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 7a4e8e63f25a6cee79940d3d353599a3abc90bf4
sanbi-uwc
parents: 1
diff changeset
9 <move type="directory" relative_symlinks="True">
1b70cac31576 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 7a4e8e63f25a6cee79940d3d353599a3abc90bf4
sanbi-uwc
parents: 1
diff changeset
10 <!-- no need to set source, gets taken from out_dir.extra_files_path -->
1b70cac31576 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 7a4e8e63f25a6cee79940d3d353599a3abc90bf4
sanbi-uwc
parents: 1
diff changeset
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/novocraft_index/${value}</target>
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85fbd52dbb36 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit d51fdc6291de173e829a839e98c6c3ae367d84bf
sanbi-uwc
parents:
diff changeset
12 </move>
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1b70cac31576 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 7a4e8e63f25a6cee79940d3d353599a3abc90bf4
sanbi-uwc
parents: 1
diff changeset
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/{$dbkey}/novocraft_index/${value}/${path}</value_translation>
1b70cac31576 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 7a4e8e63f25a6cee79940d3d353599a3abc90bf4
sanbi-uwc
parents: 1
diff changeset
14 <value_translation type="function">abspath</value_translation>
1b70cac31576 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 7a4e8e63f25a6cee79940d3d353599a3abc90bf4
sanbi-uwc
parents: 1
diff changeset
15 </column>
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85fbd52dbb36 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit d51fdc6291de173e829a839e98c6c3ae367d84bf
sanbi-uwc
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diff changeset
16 </output>
85fbd52dbb36 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit d51fdc6291de173e829a839e98c6c3ae367d84bf
sanbi-uwc
parents:
diff changeset
17 </data_table>
85fbd52dbb36 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit d51fdc6291de173e829a839e98c6c3ae367d84bf
sanbi-uwc
parents:
diff changeset
18 </data_manager>
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1b70cac31576 planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 7a4e8e63f25a6cee79940d3d353599a3abc90bf4
sanbi-uwc
parents: 1
diff changeset
19 </data_managers>