Mercurial > repos > sanbi-uwc > data_manager_novoalign_index_builder

changeset 1:4d67344bdea7 draft

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planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 1f4717cce284465cddbb221a5ca4d1f601c14f84
author sanbi-uwc
date Thu, 03 Mar 2016 06:28:09 -0500
parents 85fbd52dbb36
children e51fb8188ed9
files data_manager/novoalign_index_builder.xml data_manager_conf.xml
diffstat 2 files changed, 3 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/novoalign_index_builder.xml	Thu Mar 03 05:59:41 2016 -0500
+++ b/data_manager/novoalign_index_builder.xml	Thu Mar 03 06:28:09 2016 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8" ?>
-<tool id="novoalign_index_builder" name="NOVO ALIGN index" version="0.0.1">
+<tool id="novoalign_index_builder" name="NOVO ALIGN index" tool_type="manage_data" version="0.0.1">
     <description>Build an index for use by the Novo Align mapping tool</description>
     <requirements>
         <requirement type="package" version="0.0.1d">novoalign</requirement>
@@ -29,20 +29,13 @@
             <param type="boolean" name="create_symlink" truevalue="create_symlink" falsevalue="copy_file" label="Create symlink to orignal data instead of copying" checked="False" />
           </when>
         </conditional>
-        <!-- <param type="text" name="sequence_name" value="" label="Name of sequence" />
-        <param type="text" name="sequence_id" value="" label="ID for sequence" /> -->
     </inputs>
     <outputs>
         <data name="out_file" format="data_manager_json" />
     </outputs>
     <tests>
         <test>
-            <param name="dbkey" value="anoGam1"/>
-            <param name="sequence_name" value=""/>
-            <param name="sequence_id" value=""/>
             <param name="reference_source_selector" value="history"/>
-            <param name="input_fasta" value="phiX174.fasta"/>
-            <param name="sort_selector" value="as_is"/>
             <output name="out_file" file="phiX174_as_anoGam1.data_manager_json"/>
         </test>
     </tests>
--- a/data_manager_conf.xml	Thu Mar 03 05:59:41 2016 -0500
+++ b/data_manager_conf.xml	Thu Mar 03 06:28:09 2016 -0500
@@ -1,6 +1,7 @@
+<?xml version="1.0" encoding="utf-8" ?>
 <data_managers>
     <data_manager tool_file="data_manager/novoalign_index_builder.xml" id="novoalign_index_builder" version="0.0.1">
-        <data_table name="novo_indexes">
+        <data_table name="novocraft_index">
             <output>
                 <column name="value" />
                 <column name="dbkey" />