Mercurial > repos > sanbi-uwc > data_manager_novoalign_index_builder

changeset 4:1b70cac31576 draft

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planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 7a4e8e63f25a6cee79940d3d353599a3abc90bf4
author sanbi-uwc
date Fri, 04 Mar 2016 02:56:48 -0500
parents b63a406719c5
children db05a35d61ee
files data_manager_conf.xml
diffstat 1 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_conf.xml	Fri Mar 04 02:47:10 2016 -0500
+++ b/data_manager_conf.xml	Fri Mar 04 02:56:48 2016 -0500
@@ -5,15 +5,15 @@
             <output>
                 <column name="value" />
                 <column name="dbkey" />
-                <column name="name" />
-                <column name="path" output_ref="out_file" >
-                    <move type="file">
-                        <source>${path}</source>
-                        <target base="${GALAXY_DATA_INDEX_DIR}">${path}</target>
+                <column name="path" output_ref="out_dir">
+                    <move type="directory" relative_symlinks="True">
+                        <!-- no need to set source, gets taken from out_dir.extra_files_path -->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/novocraft_index/${value}</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_INDEX_DIR}/${path}</value_translation>
-                </column>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/{$dbkey}/novocraft_index/${value}/${path}</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column> 
             </output>
         </data_table>
     </data_manager>
-</data_managers>
\ No newline at end of file
+</data_managers>