Mercurial > repos > sanbi-uwc > data_manager_fetch_refseq
changeset 5:f992a51def8d draft
planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit b682adad2c3c74567d23e1a5cf2bfcc3df1c96ae-dirty
author | sanbi-uwc |
---|---|
date | Fri, 07 Sep 2018 19:33:05 -0400 |
parents | efe0f451c40f |
children | 7226cda27b03 |
files | data_manager/fetch_refseq.xml data_manager_conf.xml |
diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/fetch_refseq.xml Fri Sep 07 19:00:00 2018 -0400 +++ b/data_manager/fetch_refseq.xml Fri Sep 07 19:33:05 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.5" tool_type="manage_data"> +<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.6" tool_type="manage_data"> <description>Fetch FASTA data from NCBI RefSeq and update all_fasta data table</description> <requirements> <requirement type="package" version="3">python</requirement>
--- a/data_manager_conf.xml Fri Sep 07 19:00:00 2018 -0400 +++ b/data_manager_conf.xml Fri Sep 07 19:33:05 2018 -0400 @@ -9,9 +9,9 @@ <column name="path" output_ref="output_file" > <move type="file"> <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/seq/${path}</target> + <target base="${GALAXY_DATA_MANAGER_DAT A_PATH}">refseq/${dbkey}/os.path.basename(${path})</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/seq/${path}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/refseq/${dbkey}/os.path.basename(${path})</value_translation> <value_translation type="function">abspath</value_translation> </column> </output>