Mercurial > repos > saketkc > polyphen2

annotate polyphen2_web/test-data/polyphen_output_log.tsv @ 3:3c40b02934ad draft default tip

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author saketkc
date Tue, 07 Oct 2014 18:56:07 -0400
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3
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1 ===========================
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2 Stage 1/7: Validating input
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3 ===========================
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4 No errors
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5
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6 ===============================
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7 Stage 2/7: Mapping genomic SNPs
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8 ===============================
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9 No errors
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10
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11 ============================
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12 Stage 3/7: Collecting output
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13 ============================
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14 No errors
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15
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16 ===============================================
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17 Stage 4/7: Building MSA and annotating proteins
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18 ===============================================
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19 (XRCC1_HUMAN:399:R/Q) WARNING: find_gene: Swapped codons (CAG>CGG) in uc002owt.2 nucleotide sequence at position: 1195
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20 (XRCC1_HUMAN:399:R/Q) WARNING: Replaced reference AA residue (Q) with (R) in uc002owt.2 protein sequence at position: 399
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21 Total errors/warnings: 2
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22
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23 ============================
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24 Stage 5/7: Collecting output
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25 ============================
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26 No errors
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27
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28 =====================
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29 Stage 6/7: Predicting
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30 =====================
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31 No errors
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32
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33 =============================
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34 Stage 7/7: Generating reports
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35 =============================
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36 No errors