Mercurial > repos > saketkc > polyphen2
comparison polyphen2_web/test-data/polyphen_output_log.tsv @ 3:3c40b02934ad draft default tip
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author | saketkc |
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date | Tue, 07 Oct 2014 18:56:07 -0400 |
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2:f8f4ad14f5a6 | 3:3c40b02934ad |
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1 =========================== | |
2 Stage 1/7: Validating input | |
3 =========================== | |
4 No errors | |
5 | |
6 =============================== | |
7 Stage 2/7: Mapping genomic SNPs | |
8 =============================== | |
9 No errors | |
10 | |
11 ============================ | |
12 Stage 3/7: Collecting output | |
13 ============================ | |
14 No errors | |
15 | |
16 =============================================== | |
17 Stage 4/7: Building MSA and annotating proteins | |
18 =============================================== | |
19 (XRCC1_HUMAN:399:R/Q) WARNING: find_gene: Swapped codons (CAG>CGG) in uc002owt.2 nucleotide sequence at position: 1195 | |
20 (XRCC1_HUMAN:399:R/Q) WARNING: Replaced reference AA residue (Q) with (R) in uc002owt.2 protein sequence at position: 399 | |
21 Total errors/warnings: 2 | |
22 | |
23 ============================ | |
24 Stage 5/7: Collecting output | |
25 ============================ | |
26 No errors | |
27 | |
28 ===================== | |
29 Stage 6/7: Predicting | |
30 ===================== | |
31 No errors | |
32 | |
33 ============================= | |
34 Stage 7/7: Generating reports | |
35 ============================= | |
36 No errors |