Mercurial > repos > rnateam > rcas

annotate readme.rst @ 1:211a1f8c96df draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0
author rnateam
date Thu, 21 Jun 2018 14:21:11 -0400
parents 0006f650cec5
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
parents:
diff changeset
1 Important notes
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
parents:
diff changeset
2 ----------------
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
parents:
diff changeset
3
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
parents:
diff changeset
4 - the dependencies of the tool are handled by the conda dependency resolver
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
parents:
diff changeset
5
1
211a1f8c96df planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0
rnateam
parents: 0
diff changeset
6 - to install the dependencies, the galaxy administrator needs to enable the conda channels - bioconda, r, conda-forge, defaults
0
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
parents:
diff changeset
7
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
parents:
diff changeset
8 - by default, the conda installation includes hg19
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
parents:
diff changeset
9
1
211a1f8c96df planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0
rnateam
parents: 0
diff changeset
10 - to enable analysis for hg38, mm9, mm10, ce10, or dm3, the administrator needs to separately install the relevant packages from the bioconda channel
211a1f8c96df planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0
rnateam
parents: 0
diff changeset
11
211a1f8c96df planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0
rnateam
parents: 0
diff changeset
12 - bioconductor-bsgenome.hsapiens.ucsc.hg38
211a1f8c96df planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0
rnateam
parents: 0
diff changeset
13 - bioconductor-bsgenome.mmusculus.ucsc.mm9
211a1f8c96df planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0
rnateam
parents: 0
diff changeset
14 - bioconductor-bsgenome.mmusculus.ucsc.mm10
211a1f8c96df planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0
rnateam
parents: 0
diff changeset
15 - bioconductor-bsgenome.celegans.ucsc.ce10
0
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
parents:
diff changeset
16 - bioconductor-bsgenome.dmelanogaster.ucsc.dm3
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
parents:
diff changeset
17 - bioconductor-org.mm.eg.db
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
parents:
diff changeset
18 - bioconductor-org.ce.eg.db
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
parents:
diff changeset
19 - bioconductor-org.dm.eg.db
1
211a1f8c96df planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0
rnateam
parents: 0
diff changeset
20