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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
author rnateam
date Thu, 13 Apr 2017 12:33:32 -0400
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0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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1 Important notes
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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2 ----------------
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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4 - the dependencies of the tool are handled by the conda dependency resolver
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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6 - to install the dependencies, the galaxy administrator needs to configure to ensure the conda channels - bioconda, r, conda-forge, defaults
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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7
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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8 - by default, the conda installation includes hg19
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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9
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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10 - to enable analysis for mm9, ce10, dm3, the administrator needs to separately install the relevant packages from the channel bioconda
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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11 - bioconductor-bsgenome.dmelanogaster.ucsc.dm3
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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12 - bioconductor-bsgenome.celegans.ucsc.ce10
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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13 - bioconductor-bsgenome.mmusculus.ucsc.mm9
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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14 - bioconductor-org.mm.eg.db
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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15 - bioconductor-org.ce.eg.db
0006f650cec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
rnateam
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16 - bioconductor-org.dm.eg.db