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changeset 31:7a1a5664a886 draft

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fix output is not collection
author rnateam
date Thu, 17 Dec 2015 11:37:41 -0500
parents 3239487fa9c5
children c53e1cc9ad35
files flexbar_dsc.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/flexbar_dsc.xml	Thu Dec 17 11:19:35 2015 -0500
+++ b/flexbar_dsc.xml	Thu Dec 17 11:37:41 2015 -0500
@@ -421,14 +421,14 @@
     </stdio>
 
     <outputs>
+        <data format="txt" name="output" metadata_source="reads"/>
         <collection name="list_output" type="list:paired" label="Duplicate List">
       <!-- Use named regex group to grab pattern
            <identifier_0>_<identifier_1>.fq. Here identifier_0 is the list
            identifier in the nested collection and identifier_1 is either
            forward or reverse (for instance samp1_forward.fq).
       -->
-        <data format="txt" name="output" metadata_source="reads"/>
-        <discover_datasets pattern="FlexbarOutput_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" />
+            <discover_datasets pattern="FlexbarOutput_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" />
         </collection>
     </outputs>