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changeset 30:3239487fa9c5 draft

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Uploaded
author rnateam
date Thu, 17 Dec 2015 11:19:35 -0500
parents 65103aba4e5f
children 7a1a5664a886
files flexbar_dsc.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/flexbar_dsc.xml	Thu Dec 17 10:58:19 2015 -0500
+++ b/flexbar_dsc.xml	Thu Dec 17 11:19:35 2015 -0500
@@ -137,7 +137,7 @@
             $cLogging.rndTags
         #end if
 
-        --target FlexbarOutput &&
+        --target FlexbarOutput > $output &&
         for f in *_1.fastq; do mv "\$f" "`basename \$f _1.fastq`_forward.fastq"; done &&
         for f in *_2.fastq; do mv "\$f" "`basename \$f _2.fastq`_reverse.fastq"; done
     ]]></command>
@@ -427,8 +427,8 @@
            identifier in the nested collection and identifier_1 is either
            forward or reverse (for instance samp1_forward.fq).
       -->
+        <data format="txt" name="output" metadata_source="reads"/>
         <discover_datasets pattern="FlexbarOutput_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" />
-        <!--<data format="txt" name="output" metadata_source="reads"/>-->
         </collection>
     </outputs>