# HG changeset patch
# User rnateam
# Date 1450369175 18000
# Node ID 3239487fa9c5ed21115e91bc39b6e9f9e29c7033
# Parent  65103aba4e5fb1659a079c6845685e3cce355d84
Uploaded

diff -r 65103aba4e5f -r 3239487fa9c5 flexbar_dsc.xml
--- a/flexbar_dsc.xml	Thu Dec 17 10:58:19 2015 -0500
+++ b/flexbar_dsc.xml	Thu Dec 17 11:19:35 2015 -0500
@@ -137,7 +137,7 @@
             $cLogging.rndTags
         #end if
 
-        --target FlexbarOutput &&
+        --target FlexbarOutput > $output &&
         for f in *_1.fastq; do mv "\$f" "`basename \$f _1.fastq`_forward.fastq"; done &&
         for f in *_2.fastq; do mv "\$f" "`basename \$f _2.fastq`_reverse.fastq"; done
     ]]></command>
@@ -427,8 +427,8 @@
            identifier in the nested collection and identifier_1 is either
            forward or reverse (for instance samp1_forward.fq).
       -->
+        <data format="txt" name="output" metadata_source="reads"/>
         <discover_datasets pattern="FlexbarOutput_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" />
-        <!--<data format="txt" name="output" metadata_source="reads"/>-->
         </collection>
     </outputs>