# HG changeset patch
# User rnateam
# Date 1450370261 18000
# Node ID 7a1a5664a886e62cfc7be76a8c64b08288115dd1
# Parent  3239487fa9c5ed21115e91bc39b6e9f9e29c7033
fix output is not collection

diff -r 3239487fa9c5 -r 7a1a5664a886 flexbar_dsc.xml
--- a/flexbar_dsc.xml	Thu Dec 17 11:19:35 2015 -0500
+++ b/flexbar_dsc.xml	Thu Dec 17 11:37:41 2015 -0500
@@ -421,14 +421,14 @@
     </stdio>
 
     <outputs>
+        <data format="txt" name="output" metadata_source="reads"/>
         <collection name="list_output" type="list:paired" label="Duplicate List">
       <!-- Use named regex group to grab pattern
            <identifier_0>_<identifier_1>.fq. Here identifier_0 is the list
            identifier in the nested collection and identifier_1 is either
            forward or reverse (for instance samp1_forward.fq).
       -->
-        <data format="txt" name="output" metadata_source="reads"/>
-        <discover_datasets pattern="FlexbarOutput_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" />
+            <discover_datasets pattern="FlexbarOutput_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" />
         </collection>
     </outputs>