view galaxy-tools/biobank/library/import_to_library.xml @ 0:ba6cf6ede027 draft default tip

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<tool id="vl_import_to_library" name="VLI.library">
  <description>import DataSet within galaxy library/vl</description>
  <requirements>
   <requirement type="package" version="3.3">irods</requirement>
  </requirements>

  <command interpreter="bash">
    launcher.sh
    --interpreter=python
    --runner=import_to_library.py
    --host=$__user_omero_host__
    --user=$__user_omero_user__
    --passwd=$__user_omero_password__
    --galaxy_api_key=$__user_api_key__
    --operator=$__user_email__
    --logfile=${logfile}
    --data_objects=${data_objects}
    --library=${library_folder}
    --folder=${library_folder}

  </command>

  <inputs>
    <param name="data_objects" type="select" label="Choose Data Objects to import" ajax = "True" ajax-source = "galaxy/get/data_objects" sort="True"
            multiple="true"
            help="">
    </param>

    <!--<param name="library" type="text" label="Library" help=""/>

    <param name="folder" type="text" label="Folder" help=""/>-->

    <param name="library_folder" type="drill_down" label="Select Destination Folder in a Library" display="radio" hierarchy="exact" multiple="false"
            ajax = "True" ajax-source = "orione/get/libraries_and_folders" sort="True" optional="false"
            help="">
     <options>
     </options>
    </param>


  </inputs>

   <outputs>
    <data format="tabular" name="output" label="${tool.name}.mapping"/>
    <data format="tabular" name="report" label="${tool.name}.report"/>
    <data format="txt" name="logfile" label="${tool.name}.logfile"/>
  </outputs>

  <stdio>
    <exit_code range="1:" level="fatal" />
  </stdio>

  <help>

  </help>
</tool>