diff galaxy-tools/biobank/library/import_to_library.xml @ 0:ba6cf6ede027 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy-tools/biobank/library/import_to_library.xml	Wed Sep 28 06:03:30 2016 -0400
@@ -0,0 +1,56 @@
+<tool id="vl_import_to_library" name="VLI.library">
+  <description>import DataSet within galaxy library/vl</description>
+  <requirements>
+   <requirement type="package" version="3.3">irods</requirement>
+  </requirements>
+
+  <command interpreter="bash">
+    launcher.sh
+    --interpreter=python
+    --runner=import_to_library.py
+    --host=$__user_omero_host__
+    --user=$__user_omero_user__
+    --passwd=$__user_omero_password__
+    --galaxy_api_key=$__user_api_key__
+    --operator=$__user_email__
+    --logfile=${logfile}
+    --data_objects=${data_objects}
+    --library=${library_folder}
+    --folder=${library_folder}
+
+  </command>
+
+  <inputs>
+    <param name="data_objects" type="select" label="Choose Data Objects to import" ajax = "True" ajax-source = "galaxy/get/data_objects" sort="True"
+            multiple="true"
+            help="">
+    </param>
+
+    <!--<param name="library" type="text" label="Library" help=""/>
+
+    <param name="folder" type="text" label="Folder" help=""/>-->
+
+    <param name="library_folder" type="drill_down" label="Select Destination Folder in a Library" display="radio" hierarchy="exact" multiple="false"
+            ajax = "True" ajax-source = "orione/get/libraries_and_folders" sort="True" optional="false"
+            help="">
+     <options>
+     </options>
+    </param>
+
+
+  </inputs>
+
+   <outputs>
+    <data format="tabular" name="output" label="${tool.name}.mapping"/>
+    <data format="tabular" name="report" label="${tool.name}.report"/>
+    <data format="txt" name="logfile" label="${tool.name}.logfile"/>
+  </outputs>
+
+  <stdio>
+    <exit_code range="1:" level="fatal" />
+  </stdio>
+
+  <help>
+
+  </help>
+</tool>
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