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1 <tool id="vl_import_to_library" name="VLI.library">
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2 <description>import DataSet within galaxy library/vl</description>
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3 <requirements>
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4 <requirement type="package" version="3.3">irods</requirement>
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5 </requirements>
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6
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7 <command interpreter="bash">
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8 launcher.sh
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9 --interpreter=python
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10 --runner=import_to_library.py
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11 --host=$__user_omero_host__
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12 --user=$__user_omero_user__
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13 --passwd=$__user_omero_password__
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14 --galaxy_api_key=$__user_api_key__
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15 --operator=$__user_email__
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16 --logfile=${logfile}
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17 --data_objects=${data_objects}
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18 --library=${library_folder}
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19 --folder=${library_folder}
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20
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21 </command>
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22
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23 <inputs>
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24 <param name="data_objects" type="select" label="Choose Data Objects to import" ajax = "True" ajax-source = "galaxy/get/data_objects" sort="True"
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25 multiple="true"
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26 help="">
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27 </param>
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28
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29 <!--<param name="library" type="text" label="Library" help=""/>
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30
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31 <param name="folder" type="text" label="Folder" help=""/>-->
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32
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33 <param name="library_folder" type="drill_down" label="Select Destination Folder in a Library" display="radio" hierarchy="exact" multiple="false"
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34 ajax = "True" ajax-source = "orione/get/libraries_and_folders" sort="True" optional="false"
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35 help="">
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36 <options>
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37 </options>
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38 </param>
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39
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40
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41 </inputs>
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42
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43 <outputs>
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44 <data format="tabular" name="output" label="${tool.name}.mapping"/>
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45 <data format="tabular" name="report" label="${tool.name}.report"/>
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46 <data format="txt" name="logfile" label="${tool.name}.logfile"/>
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47 </outputs>
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48
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49 <stdio>
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50 <exit_code range="1:" level="fatal" />
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51 </stdio>
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52
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53 <help>
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54
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55 </help>
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56 </tool> |
