Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

changeset 47:1bc0077b2c91 draft

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 06b2cc0d518a6a4d77b865b6567e0bc6a2fb26df-dirty
author pjbriggs
date Tue, 17 Dec 2019 09:12:13 +0000
parents 8d5fe964f61f
children 04e71fda5b9c
files amplicon_analysis_pipeline.py
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/amplicon_analysis_pipeline.py	Wed Dec 11 13:59:48 2019 +0000
+++ b/amplicon_analysis_pipeline.py	Tue Dec 17 09:12:13 2019 +0000
@@ -317,7 +317,9 @@
                                 for pdf in
                                 sorted(glob.glob(
                                     os.path.join(error_rate_plots_dir,"*.pdf")))]
-        with open("error_rate_plots.html","w") as error_rate_plots_out:
+        error_rate_plots_html = os.path.join(error_rate_plots_dir,
+                                             "error_rate_plots.html")
+        with open(error_rate_plots_html,"w") as error_rate_plots_out:
             error_rate_plots_out.write("""<html>
 <head>
 <title>Amplicon analysis pipeline: DADA2 Error Rate Plots</title>