Mercurial > repos > pjbriggs > amplicon_analysis_pipeline
changeset 46:8d5fe964f61f draft
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 06b2cc0d518a6a4d77b865b6567e0bc6a2fb26df
| author | pjbriggs |
|---|---|
| date | Wed, 11 Dec 2019 13:59:48 +0000 |
| parents | 4bfa62618f7c |
| children | 1bc0077b2c91 |
| files | amplicon_analysis_pipeline.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/amplicon_analysis_pipeline.xml Wed Dec 11 13:45:05 2019 +0000 +++ b/amplicon_analysis_pipeline.xml Wed Dec 11 13:59:48 2019 +0000 @@ -70,12 +70,12 @@ ## Collect outputs cp Metatable_log/Metatable_mod.txt "${metatable_mod}" && #if str( $pipeline_name ) == "Vsearch" - # Vsearch-specific + ## Vsearch-specific cp ${pipeline_name}_OTU_tables/multiplexed_linearized_dereplicated_mc2_repset_nonchimeras_tax_OTU_table.biom "${tax_otu_table_biom_file}" && cp Multiplexed_files/${pipeline_name}_pipeline/multiplexed_linearized_dereplicated_mc2_repset_nonchimeras_OTUs.fasta "${dereplicated_nonchimera_otus_fasta}" && cp QUALITY_CONTROL/Reads_count.txt "$read_counts_out" && #else - # DADA2-specific + ## DADA2-specific cp ${pipeline_name}_OTU_tables/DADA2_tax_OTU_table.biom "${tax_otu_table_biom_file}" && cp ${pipeline_name}_OTU_tables/seqs.fa "${dereplicated_nonchimera_otus_fasta}" && #end if