Mercurial > repos > peterjc > ncbi_blast_plus
changeset 33:5402f9b0d508 draft
Uploaded v0.0.22b, using BLAST+ 2.2.28 now
| author | peterjc |
|---|---|
| date | Thu, 28 Nov 2013 08:50:15 -0500 |
| parents | b2795652d2b4 |
| children | 3952ec621ea9 |
| files | test-data/blastp_four_human_vs_rhodopsin.xml test-data/blastx_rhodopsin_vs_four_human.xml test-data/tblastn_four_human_vs_rhodopsin.html test-data/tblastn_four_human_vs_rhodopsin.xml tools/ncbi_blast_plus/README.rst tools/ncbi_blast_plus/check_no_duplicates.py tools/ncbi_blast_plus/ncbi_macros.xml tools/ncbi_blast_plus/ncbi_makeblastdb.xml |
| diffstat | 8 files changed, 2153 insertions(+), 2041 deletions(-) [+] |
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--- a/test-data/blastp_four_human_vs_rhodopsin.xml Mon Nov 25 10:58:46 2013 -0500 +++ b/test-data/blastp_four_human_vs_rhodopsin.xml Thu Nov 28 08:50:15 2013 -0500 @@ -2,7 +2,7 @@ <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> <BlastOutput> <BlastOutput_program>blastp</BlastOutput_program> - <BlastOutput_version>BLASTP 2.2.27+</BlastOutput_version> + <BlastOutput_version>BLASTP 2.2.28+</BlastOutput_version> <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> <BlastOutput_db></BlastOutput_db> <BlastOutput_query-ID>sp|Q9BS26|ERP44_HUMAN</BlastOutput_query-ID> @@ -17,630 +17,649 @@ <Parameters_filter>F</Parameters_filter> </Parameters> </BlastOutput_param> - <BlastOutput_iterations> - <Iteration> - <Iteration_iter-num>1</Iteration_iter-num> - <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> - <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>406</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119568</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>2</Iteration_iter-num> - <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> - <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>406</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119568</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>3</Iteration_iter-num> - <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> - <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>406</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119568</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>4</Iteration_iter-num> - <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> - <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>406</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119568</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>5</Iteration_iter-num> - <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> - <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>406</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119568</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>6</Iteration_iter-num> - <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> - <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>406</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119568</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>7</Iteration_iter-num> - <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> - <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> - <Iteration_query-len>1161</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>38</Statistics_hsp-len> - <Statistics_eff-space>348130</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>8</Iteration_iter-num> - <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> - <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> - <Iteration_query-len>1161</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>38</Statistics_hsp-len> - <Statistics_eff-space>348130</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>9</Iteration_iter-num> - <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> - <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> - <Iteration_query-len>1161</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>38</Statistics_hsp-len> - <Statistics_eff-space>348130</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>10</Iteration_iter-num> - <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> - <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> - <Iteration_query-len>1161</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>38</Statistics_hsp-len> - <Statistics_eff-space>348130</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>11</Iteration_iter-num> - <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> - <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> - <Iteration_query-len>1161</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>38</Statistics_hsp-len> - <Statistics_eff-space>348130</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>12</Iteration_iter-num> - <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> - <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> - <Iteration_query-len>1161</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>38</Statistics_hsp-len> - <Statistics_eff-space>348130</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>13</Iteration_iter-num> - <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> - <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> - <Iteration_query-len>1382</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>39</Statistics_hsp-len> - <Statistics_eff-space>414987</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>14</Iteration_iter-num> - <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> - <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> - <Iteration_query-len>1382</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>39</Statistics_hsp-len> - <Statistics_eff-space>414987</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>15</Iteration_iter-num> - <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> - <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> - <Iteration_query-len>1382</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>39</Statistics_hsp-len> - <Statistics_eff-space>414987</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>16</Iteration_iter-num> - <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> - <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> - <Iteration_query-len>1382</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>39</Statistics_hsp-len> - <Statistics_eff-space>414987</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>17</Iteration_iter-num> - <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> - <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> - <Iteration_query-len>1382</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>39</Statistics_hsp-len> - <Statistics_eff-space>414987</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>18</Iteration_iter-num> - <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> - <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> - <Iteration_query-len>1382</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>39</Statistics_hsp-len> - <Statistics_eff-space>414987</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>19</Iteration_iter-num> - <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> - <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>348</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>gi|57163783|ref|NP_001009242.1|</Hit_id> - <Hit_def>rhodopsin [Felis catus]</Hit_def> - <Hit_accession>NP_001009242</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>701.049</Hsp_bit-score> - <Hsp_score>1808</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>348</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>348</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>336</Hsp_identity> - <Hsp_positive>343</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>348</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq> - <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>101761</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>20</Iteration_iter-num> - <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> - <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>348</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>gi|3024260|sp|P56514.1|OPSD_BUFBU</Hit_id> - <Hit_def>RecName: Full=Rhodopsin</Hit_def> - <Hit_accession>P56514</Hit_accession> - <Hit_len>354</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>619.002</Hsp_bit-score> - <Hsp_score>1595</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>341</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>342</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>290</Hsp_identity> - <Hsp_positive>322</Hsp_positive> - <Hsp_gaps>1</Hsp_gaps> - <Hsp_align-len>342</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq> - <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>101761</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>21</Iteration_iter-num> - <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> - <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>348</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>gi|283855846|gb|ADB45242.1|</Hit_id> - <Hit_def>rhodopsin [Cynopterus brachyotis]</Hit_def> - <Hit_accession>ADB45242</Hit_accession> - <Hit_len>328</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>653.284</Hsp_bit-score> - <Hsp_score>1684</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>11</Hsp_query-from> - <Hsp_query-to>338</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>328</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>311</Hsp_identity> - <Hsp_positive>321</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>328</Hsp_align-len> - <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS</Hsp_qseq> - <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS</Hsp_hseq> - <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T S</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>101761</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>22</Iteration_iter-num> - <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> - <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>348</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>gi|283855823|gb|ADB45229.1|</Hit_id> - <Hit_def>rhodopsin [Myotis pilosus]</Hit_def> - <Hit_accession>ADB45229</Hit_accession> - <Hit_len>328</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>631.328</Hsp_bit-score> - <Hsp_score>1627</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>11</Hsp_query-from> - <Hsp_query-to>338</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>328</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>311</Hsp_identity> - <Hsp_positive>323</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>328</Hsp_align-len> - <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS</Hsp_qseq> - <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS</Hsp_hseq> - <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T S</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>101761</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>23</Iteration_iter-num> - <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> - <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>348</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>gi|223523|prf||0811197A</Hit_id> - <Hit_def>rhodopsin [Bos taurus]</Hit_def> - <Hit_accession>0811197A</Hit_accession> - <Hit_len>347</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>673.315</Hsp_bit-score> - <Hsp_score>1736</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>348</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>347</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>324</Hsp_identity> - <Hsp_positive>336</Hsp_positive> - <Hsp_gaps>1</Hsp_gaps> - <Hsp_align-len>348</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq> - <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGID YT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>101761</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>24</Iteration_iter-num> - <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> - <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>348</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>gi|12583665|dbj|BAB21486.1|</Hit_id> - <Hit_def>fresh water form rod opsin [Conger myriaster]</Hit_def> - <Hit_accession>BAB21486</Hit_accession> - <Hit_len>354</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>599.356</Hsp_bit-score> - <Hsp_score>1544</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>341</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>342</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>281</Hsp_identity> - <Hsp_positive>314</Hsp_positive> - <Hsp_gaps>1</Hsp_gaps> - <Hsp_align-len>342</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq> - <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>101761</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - </BlastOutput_iterations> -</BlastOutput> \ No newline at end of file +<BlastOutput_iterations> +<Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> + <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>406</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119568</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>2</Iteration_iter-num> + <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> + <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>406</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119568</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>3</Iteration_iter-num> + <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> + <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>406</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119568</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>4</Iteration_iter-num> + <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> + <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>406</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119568</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>5</Iteration_iter-num> + <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> + <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>406</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119568</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>6</Iteration_iter-num> + <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID> + <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>406</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119568</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>7</Iteration_iter-num> + <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> + <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> + <Iteration_query-len>1161</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>38</Statistics_hsp-len> + <Statistics_eff-space>348130</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>8</Iteration_iter-num> + <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> + <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> + <Iteration_query-len>1161</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>38</Statistics_hsp-len> + <Statistics_eff-space>348130</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>9</Iteration_iter-num> + <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> + <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> + <Iteration_query-len>1161</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>38</Statistics_hsp-len> + <Statistics_eff-space>348130</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>10</Iteration_iter-num> + <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> + <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> + <Iteration_query-len>1161</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>38</Statistics_hsp-len> + <Statistics_eff-space>348130</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>11</Iteration_iter-num> + <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> + <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> + <Iteration_query-len>1161</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>38</Statistics_hsp-len> + <Statistics_eff-space>348130</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>12</Iteration_iter-num> + <Iteration_query-ID>sp|Q9NSY1|BMP2K_HUMAN</Iteration_query-ID> + <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> + <Iteration_query-len>1161</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>38</Statistics_hsp-len> + <Statistics_eff-space>348130</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>13</Iteration_iter-num> + <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> + <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> + <Iteration_query-len>1382</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>39</Statistics_hsp-len> + <Statistics_eff-space>414987</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>14</Iteration_iter-num> + <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> + <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> + <Iteration_query-len>1382</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>39</Statistics_hsp-len> + <Statistics_eff-space>414987</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>15</Iteration_iter-num> + <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> + <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> + <Iteration_query-len>1382</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>39</Statistics_hsp-len> + <Statistics_eff-space>414987</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>16</Iteration_iter-num> + <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> + <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> + <Iteration_query-len>1382</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>39</Statistics_hsp-len> + <Statistics_eff-space>414987</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>17</Iteration_iter-num> + <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> + <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> + <Iteration_query-len>1382</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>39</Statistics_hsp-len> + <Statistics_eff-space>414987</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>18</Iteration_iter-num> + <Iteration_query-ID>sp|P06213|INSR_HUMAN</Iteration_query-ID> + <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> + <Iteration_query-len>1382</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>39</Statistics_hsp-len> + <Statistics_eff-space>414987</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>19</Iteration_iter-num> + <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> + <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>348</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|57163783|ref|NP_001009242.1|</Hit_id> + <Hit_def>rhodopsin [Felis catus]</Hit_def> + <Hit_accession>NP_001009242</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>701.049</Hsp_bit-score> + <Hsp_score>1808</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>348</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>348</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>336</Hsp_identity> + <Hsp_positive>343</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>348</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq> + <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>101761</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>20</Iteration_iter-num> + <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> + <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>348</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|3024260|sp|P56514.1|OPSD_BUFBU</Hit_id> + <Hit_def>RecName: Full=Rhodopsin</Hit_def> + <Hit_accession>P56514</Hit_accession> + <Hit_len>354</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>619.002</Hsp_bit-score> + <Hsp_score>1595</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>341</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>342</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>290</Hsp_identity> + <Hsp_positive>322</Hsp_positive> + <Hsp_gaps>1</Hsp_gaps> + <Hsp_align-len>342</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq> + <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>101761</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>21</Iteration_iter-num> + <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> + <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>348</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|283855846|gb|ADB45242.1|</Hit_id> + <Hit_def>rhodopsin [Cynopterus brachyotis]</Hit_def> + <Hit_accession>ADB45242</Hit_accession> + <Hit_len>328</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>653.284</Hsp_bit-score> + <Hsp_score>1684</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>11</Hsp_query-from> + <Hsp_query-to>338</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>328</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>311</Hsp_identity> + <Hsp_positive>321</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>328</Hsp_align-len> + <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS</Hsp_qseq> + <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS</Hsp_hseq> + <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T S</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>101761</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>22</Iteration_iter-num> + <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> + <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>348</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|283855823|gb|ADB45229.1|</Hit_id> + <Hit_def>rhodopsin [Myotis pilosus]</Hit_def> + <Hit_accession>ADB45229</Hit_accession> + <Hit_len>328</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>631.328</Hsp_bit-score> + <Hsp_score>1627</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>11</Hsp_query-from> + <Hsp_query-to>338</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>328</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>311</Hsp_identity> + <Hsp_positive>323</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>328</Hsp_align-len> + <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS</Hsp_qseq> + <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS</Hsp_hseq> + <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T S</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>101761</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>23</Iteration_iter-num> + <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> + <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>348</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|223523|prf||0811197A</Hit_id> + <Hit_def>rhodopsin [Bos taurus]</Hit_def> + <Hit_accession>0811197A</Hit_accession> + <Hit_len>347</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>673.315</Hsp_bit-score> + <Hsp_score>1736</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>348</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>347</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>324</Hsp_identity> + <Hsp_positive>336</Hsp_positive> + <Hsp_gaps>1</Hsp_gaps> + <Hsp_align-len>348</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq> + <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGID YT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>101761</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>24</Iteration_iter-num> + <Iteration_query-ID>sp|P08100|OPSD_HUMAN</Iteration_query-ID> + <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>348</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>gi|12583665|dbj|BAB21486.1|</Hit_id> + <Hit_def>fresh water form rod opsin [Conger myriaster]</Hit_def> + <Hit_accession>BAB21486</Hit_accession> + <Hit_len>354</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>599.356</Hsp_bit-score> + <Hsp_score>1544</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>341</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>342</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>281</Hsp_identity> + <Hsp_positive>314</Hsp_positive> + <Hsp_gaps>1</Hsp_gaps> + <Hsp_align-len>342</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq> + <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>101761</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +</BlastOutput_iterations> +</BlastOutput> +
--- a/test-data/blastx_rhodopsin_vs_four_human.xml Mon Nov 25 10:58:46 2013 -0500 +++ b/test-data/blastx_rhodopsin_vs_four_human.xml Thu Nov 28 08:50:15 2013 -0500 @@ -2,7 +2,7 @@ <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> <BlastOutput> <BlastOutput_program>blastx</BlastOutput_program> - <BlastOutput_version>BLASTX 2.2.27+</BlastOutput_version> + <BlastOutput_version>BLASTX 2.2.28+</BlastOutput_version> <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> <BlastOutput_db></BlastOutput_db> <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> @@ -17,706 +17,725 @@ <Parameters_filter>L;</Parameters_filter> </Parameters> </BlastOutput_param> - <BlastOutput_iterations> - <Iteration> - <Iteration_iter-num>1</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119944</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>2</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119944</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>3</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119944</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>4</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>639.032</Hsp_bit-score> - <Hsp_score>1647</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>1044</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>348</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>336</Hsp_identity> - <Hsp_positive>343</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>348</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> - <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119944</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>5</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> - <Iteration_query-len>1574</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>33</Statistics_hsp-len> - <Statistics_eff-space>183143</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>6</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> - <Iteration_query-len>1574</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>33</Statistics_hsp-len> - <Statistics_eff-space>183143</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>7</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> - <Iteration_query-len>1574</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>33</Statistics_hsp-len> - <Statistics_eff-space>183143</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>8</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> - <Iteration_query-len>1574</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>551.206</Hsp_bit-score> - <Hsp_score>1419</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>42</Hsp_query-from> - <Hsp_query-to>1037</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>332</Hsp_hit-to> - <Hsp_query-frame>3</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>283</Hsp_identity> - <Hsp_positive>315</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>332</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq> - <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>33</Statistics_hsp-len> - <Statistics_eff-space>183143</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>9</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> - <Iteration_query-len>4301</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>40</Statistics_hsp-len> - <Statistics_eff-space>509838</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>10</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> - <Iteration_query-len>4301</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>40</Statistics_hsp-len> - <Statistics_eff-space>509838</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>11</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> - <Iteration_query-len>4301</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>40</Statistics_hsp-len> - <Statistics_eff-space>509838</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>12</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> - <Iteration_query-len>4301</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>220.32</Hsp_bit-score> - <Hsp_score>560</Hsp_score> - <Hsp_evalue>4.29169e-67</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>333</Hsp_query-to> - <Hsp_hit-from>11</Hsp_hit-from> - <Hsp_hit-to>121</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>107</Hsp_identity> - <Hsp_positive>109</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>111</Hsp_align-len> - <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> - <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> - <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>127.487</Hsp_bit-score> - <Hsp_score>319</Hsp_score> - <Hsp_evalue>1.95079e-35</Hsp_evalue> - <Hsp_query-from>3174</Hsp_query-from> - <Hsp_query-to>3368</Hsp_query-to> - <Hsp_hit-from>248</Hsp_hit-from> - <Hsp_hit-to>312</Hsp_hit-to> - <Hsp_query-frame>3</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>60</Hsp_identity> - <Hsp_positive>64</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>65</Hsp_align-len> - <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq> - <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq> - <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>121.324</Hsp_bit-score> - <Hsp_score>303</Hsp_score> - <Hsp_evalue>1.96633e-33</Hsp_evalue> - <Hsp_query-from>2855</Hsp_query-from> - <Hsp_query-to>3031</Hsp_query-to> - <Hsp_hit-from>177</Hsp_hit-from> - <Hsp_hit-to>235</Hsp_hit-to> - <Hsp_query-frame>2</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>54</Hsp_identity> - <Hsp_positive>57</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>59</Hsp_align-len> - <Hsp_qseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_qseq> - <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_hseq> - <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>97.0561</Hsp_bit-score> - <Hsp_score>240</Hsp_score> - <Hsp_evalue>1.16473e-25</Hsp_evalue> - <Hsp_query-from>1404</Hsp_query-from> - <Hsp_query-to>1580</Hsp_query-to> - <Hsp_hit-from>119</Hsp_hit-from> - <Hsp_hit-to>177</Hsp_hit-to> - <Hsp_query-frame>3</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>55</Hsp_identity> - <Hsp_positive>56</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>59</Hsp_align-len> - <Hsp_qseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_qseq> - <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq> - <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>56.9954</Hsp_bit-score> - <Hsp_score>136</Hsp_score> - <Hsp_evalue>1.23645e-12</Hsp_evalue> - <Hsp_query-from>4222</Hsp_query-from> - <Hsp_query-to>4299</Hsp_query-to> - <Hsp_hit-from>312</Hsp_hit-from> - <Hsp_hit-to>337</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>23</Hsp_identity> - <Hsp_positive>24</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>26</Hsp_align-len> - <Hsp_qseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_qseq> - <Hsp_hseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_hseq> - <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>40</Statistics_hsp-len> - <Statistics_eff-space>509838</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>13</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> - <Iteration_query-len>983</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>112346</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>14</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> - <Iteration_query-len>983</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>112346</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>15</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> - <Iteration_query-len>983</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>112346</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>16</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> - <Iteration_query-len>983</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>589.341</Hsp_bit-score> - <Hsp_score>1518</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>978</Hsp_query-to> - <Hsp_hit-from>11</Hsp_hit-from> - <Hsp_hit-to>336</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>310</Hsp_identity> - <Hsp_positive>322</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>326</Hsp_align-len> - <Hsp_qseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq> - <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq> - <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>112346</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>17</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119944</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>18</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119944</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>19</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119944</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>20</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>619.387</Hsp_bit-score> - <Hsp_score>1596</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>1044</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>348</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>325</Hsp_identity> - <Hsp_positive>337</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>348</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> - <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>30</Statistics_hsp-len> - <Statistics_eff-space>119944</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>21</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> - <Iteration_query-len>1344</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>32</Statistics_hsp-len> - <Statistics_eff-space>155584</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>22</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> - <Iteration_query-len>1344</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>32</Statistics_hsp-len> - <Statistics_eff-space>155584</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>23</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> - <Iteration_query-len>1344</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>32</Statistics_hsp-len> - <Statistics_eff-space>155584</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>24</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> - <Iteration_query-len>1344</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>532.717</Hsp_bit-score> - <Hsp_score>1371</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>23</Hsp_query-from> - <Hsp_query-to>1021</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>333</Hsp_hit-to> - <Hsp_query-frame>2</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>272</Hsp_identity> - <Hsp_positive>307</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>333</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA</Hsp_hseq> - <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++ </Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>32</Statistics_hsp-len> - <Statistics_eff-space>155584</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - </BlastOutput_iterations> -</BlastOutput> \ No newline at end of file +<BlastOutput_iterations> +<Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>2</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>3</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>4</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>639.032</Hsp_bit-score> + <Hsp_score>1647</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>1044</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>348</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>336</Hsp_identity> + <Hsp_positive>343</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>348</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> + <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>5</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> + <Iteration_query-len>1574</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>33</Statistics_hsp-len> + <Statistics_eff-space>183143</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>6</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> + <Iteration_query-len>1574</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>33</Statistics_hsp-len> + <Statistics_eff-space>183143</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>7</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> + <Iteration_query-len>1574</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>33</Statistics_hsp-len> + <Statistics_eff-space>183143</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>8</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> + <Iteration_query-len>1574</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>551.206</Hsp_bit-score> + <Hsp_score>1419</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>42</Hsp_query-from> + <Hsp_query-to>1037</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>332</Hsp_hit-to> + <Hsp_query-frame>3</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>283</Hsp_identity> + <Hsp_positive>315</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>332</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq> + <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>33</Statistics_hsp-len> + <Statistics_eff-space>183143</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>9</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> + <Iteration_query-len>4301</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>40</Statistics_hsp-len> + <Statistics_eff-space>509838</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>10</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> + <Iteration_query-len>4301</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>40</Statistics_hsp-len> + <Statistics_eff-space>509838</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>11</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> + <Iteration_query-len>4301</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>40</Statistics_hsp-len> + <Statistics_eff-space>509838</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>12</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> + <Iteration_query-len>4301</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>220.32</Hsp_bit-score> + <Hsp_score>560</Hsp_score> + <Hsp_evalue>4.29169e-67</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>333</Hsp_query-to> + <Hsp_hit-from>11</Hsp_hit-from> + <Hsp_hit-to>121</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>107</Hsp_identity> + <Hsp_positive>109</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>111</Hsp_align-len> + <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> + <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> + <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>127.487</Hsp_bit-score> + <Hsp_score>319</Hsp_score> + <Hsp_evalue>1.95079e-35</Hsp_evalue> + <Hsp_query-from>3174</Hsp_query-from> + <Hsp_query-to>3368</Hsp_query-to> + <Hsp_hit-from>248</Hsp_hit-from> + <Hsp_hit-to>312</Hsp_hit-to> + <Hsp_query-frame>3</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>60</Hsp_identity> + <Hsp_positive>64</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>65</Hsp_align-len> + <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq> + <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq> + <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>121.324</Hsp_bit-score> + <Hsp_score>303</Hsp_score> + <Hsp_evalue>1.96633e-33</Hsp_evalue> + <Hsp_query-from>2855</Hsp_query-from> + <Hsp_query-to>3031</Hsp_query-to> + <Hsp_hit-from>177</Hsp_hit-from> + <Hsp_hit-to>235</Hsp_hit-to> + <Hsp_query-frame>2</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>54</Hsp_identity> + <Hsp_positive>57</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>59</Hsp_align-len> + <Hsp_qseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_qseq> + <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_hseq> + <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>97.0561</Hsp_bit-score> + <Hsp_score>240</Hsp_score> + <Hsp_evalue>1.16473e-25</Hsp_evalue> + <Hsp_query-from>1404</Hsp_query-from> + <Hsp_query-to>1580</Hsp_query-to> + <Hsp_hit-from>119</Hsp_hit-from> + <Hsp_hit-to>177</Hsp_hit-to> + <Hsp_query-frame>3</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>55</Hsp_identity> + <Hsp_positive>56</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>59</Hsp_align-len> + <Hsp_qseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_qseq> + <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq> + <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>56.9954</Hsp_bit-score> + <Hsp_score>136</Hsp_score> + <Hsp_evalue>1.23645e-12</Hsp_evalue> + <Hsp_query-from>4222</Hsp_query-from> + <Hsp_query-to>4299</Hsp_query-to> + <Hsp_hit-from>312</Hsp_hit-from> + <Hsp_hit-to>337</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>23</Hsp_identity> + <Hsp_positive>24</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>26</Hsp_align-len> + <Hsp_qseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_qseq> + <Hsp_hseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_hseq> + <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>40</Statistics_hsp-len> + <Statistics_eff-space>509838</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>13</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> + <Iteration_query-len>983</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>112346</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>14</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> + <Iteration_query-len>983</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>112346</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>15</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> + <Iteration_query-len>983</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>112346</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>16</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> + <Iteration_query-len>983</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>589.341</Hsp_bit-score> + <Hsp_score>1518</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>978</Hsp_query-to> + <Hsp_hit-from>11</Hsp_hit-from> + <Hsp_hit-to>336</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>310</Hsp_identity> + <Hsp_positive>322</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>326</Hsp_align-len> + <Hsp_qseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq> + <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq> + <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>112346</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>17</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>18</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>19</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>20</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>619.387</Hsp_bit-score> + <Hsp_score>1596</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>1044</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>348</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>325</Hsp_identity> + <Hsp_positive>337</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>348</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> + <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>21</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> + <Iteration_query-len>1344</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>32</Statistics_hsp-len> + <Statistics_eff-space>155584</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>22</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> + <Iteration_query-len>1344</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>32</Statistics_hsp-len> + <Statistics_eff-space>155584</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>23</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> + <Iteration_query-len>1344</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>32</Statistics_hsp-len> + <Statistics_eff-space>155584</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>24</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> + <Iteration_query-len>1344</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>532.717</Hsp_bit-score> + <Hsp_score>1371</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>23</Hsp_query-from> + <Hsp_query-to>1021</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>333</Hsp_hit-to> + <Hsp_query-frame>2</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>272</Hsp_identity> + <Hsp_positive>307</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>333</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA</Hsp_hseq> + <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++ </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>32</Statistics_hsp-len> + <Statistics_eff-space>155584</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +</BlastOutput_iterations> +</BlastOutput> +
--- a/test-data/tblastn_four_human_vs_rhodopsin.html Mon Nov 25 10:58:46 2013 -0500 +++ b/test-data/tblastn_four_human_vs_rhodopsin.html Thu Nov 28 08:50:15 2013 -0500 @@ -3,7 +3,7 @@ <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099"> <PRE> -<b>TBLASTN 2.2.27+</b> +<b>TBLASTN 2.2.28+</b> <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
--- a/test-data/tblastn_four_human_vs_rhodopsin.xml Mon Nov 25 10:58:46 2013 -0500 +++ b/test-data/tblastn_four_human_vs_rhodopsin.xml Thu Nov 28 08:50:15 2013 -0500 @@ -2,7 +2,7 @@ <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> <BlastOutput> <BlastOutput_program>tblastn</BlastOutput_program> - <BlastOutput_version>TBLASTN 2.2.27+</BlastOutput_version> + <BlastOutput_version>TBLASTN 2.2.28+</BlastOutput_version> <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> <BlastOutput_db></BlastOutput_db> <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> @@ -17,706 +17,725 @@ <Parameters_filter>F</Parameters_filter> </Parameters> </BlastOutput_param> - <BlastOutput_iterations> - <Iteration> - <Iteration_iter-num>1</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>406</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>19</Statistics_hsp-len> - <Statistics_eff-space>127710</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>2</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>406</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>19</Statistics_hsp-len> - <Statistics_eff-space>127710</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>3</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>406</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>19</Statistics_hsp-len> - <Statistics_eff-space>127710</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>4</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>406</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>19</Statistics_hsp-len> - <Statistics_eff-space>127710</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>5</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>406</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>19</Statistics_hsp-len> - <Statistics_eff-space>127710</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>6</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>406</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>19</Statistics_hsp-len> - <Statistics_eff-space>127710</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>7</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> - <Iteration_query-len>1161</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>23</Statistics_hsp-len> - <Statistics_eff-space>370988</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>8</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> - <Iteration_query-len>1161</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>23</Statistics_hsp-len> - <Statistics_eff-space>370988</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>9</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> - <Iteration_query-len>1161</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>23</Statistics_hsp-len> - <Statistics_eff-space>370988</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>10</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> - <Iteration_query-len>1161</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>23</Statistics_hsp-len> - <Statistics_eff-space>370988</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>11</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> - <Iteration_query-len>1161</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>23</Statistics_hsp-len> - <Statistics_eff-space>370988</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>12</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> - <Iteration_query-len>1161</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>23</Statistics_hsp-len> - <Statistics_eff-space>370988</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>13</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> - <Iteration_query-len>1382</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>24</Statistics_hsp-len> - <Statistics_eff-space>441350</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>14</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> - <Iteration_query-len>1382</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>24</Statistics_hsp-len> - <Statistics_eff-space>441350</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>15</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> - <Iteration_query-len>1382</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>24</Statistics_hsp-len> - <Statistics_eff-space>441350</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>16</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> - <Iteration_query-len>1382</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>24</Statistics_hsp-len> - <Statistics_eff-space>441350</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>17</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> - <Iteration_query-len>1382</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>24</Statistics_hsp-len> - <Statistics_eff-space>441350</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>18</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> - <Iteration_query-len>1382</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>24</Statistics_hsp-len> - <Statistics_eff-space>441350</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>19</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>348</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_1</Hit_id> - <Hit_def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Hit_def> - <Hit_accession>Subject_1</Hit_accession> - <Hit_len>1047</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>732.393</Hsp_bit-score> - <Hsp_score>1689</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>348</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>1044</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>336</Hsp_identity> - <Hsp_positive>343</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>348</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq> - <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>18</Statistics_hsp-len> - <Statistics_eff-space>109230</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>20</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>348</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_2</Hit_id> - <Hit_def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Hit_def> - <Hit_accession>Subject_2</Hit_accession> - <Hit_len>1574</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>646.12</Hsp_bit-score> - <Hsp_score>1489</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>341</Hsp_query-to> - <Hsp_hit-from>42</Hsp_hit-from> - <Hsp_hit-to>1067</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>3</Hsp_hit-frame> - <Hsp_identity>290</Hsp_identity> - <Hsp_positive>320</Hsp_positive> - <Hsp_gaps>1</Hsp_gaps> - <Hsp_align-len>342</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq> - <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>18</Statistics_hsp-len> - <Statistics_eff-space>109230</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>21</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>348</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_3</Hit_id> - <Hit_def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Hit_def> - <Hit_accession>Subject_3</Hit_accession> - <Hit_len>4301</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>151.343</Hsp_bit-score> - <Hsp_score>342</Hsp_score> - <Hsp_evalue>1.39567e-72</Hsp_evalue> - <Hsp_query-from>239</Hsp_query-from> - <Hsp_query-to>312</Hsp_query-to> - <Hsp_hit-from>3147</Hsp_hit-from> - <Hsp_hit-to>3368</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>3</Hsp_hit-frame> - <Hsp_identity>69</Hsp_identity> - <Hsp_positive>73</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>74</Hsp_align-len> - <Hsp_qseq>ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_qseq> - <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq> - <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>126.324</Hsp_bit-score> - <Hsp_score>284</Hsp_score> - <Hsp_evalue>1.39567e-72</Hsp_evalue> - <Hsp_query-from>177</Hsp_query-from> - <Hsp_query-to>235</Hsp_query-to> - <Hsp_hit-from>2855</Hsp_hit-from> - <Hsp_hit-to>3031</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>2</Hsp_hit-frame> - <Hsp_identity>54</Hsp_identity> - <Hsp_positive>57</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>59</Hsp_align-len> - <Hsp_qseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_qseq> - <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq> - <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>229.42</Hsp_bit-score> - <Hsp_score>523</Hsp_score> - <Hsp_evalue>9.34154e-67</Hsp_evalue> - <Hsp_query-from>11</Hsp_query-from> - <Hsp_query-to>121</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>333</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>107</Hsp_identity> - <Hsp_positive>109</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>111</Hsp_align-len> - <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> - <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> - <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>122.873</Hsp_bit-score> - <Hsp_score>276</Hsp_score> - <Hsp_evalue>1.03783e-32</Hsp_evalue> - <Hsp_query-from>119</Hsp_query-from> - <Hsp_query-to>177</Hsp_query-to> - <Hsp_hit-from>1404</Hsp_hit-from> - <Hsp_hit-to>1580</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>3</Hsp_hit-frame> - <Hsp_identity>55</Hsp_identity> - <Hsp_positive>56</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>59</Hsp_align-len> - <Hsp_qseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_qseq> - <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq> - <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>57.7368</Hsp_bit-score> - <Hsp_score>125</Hsp_score> - <Hsp_evalue>1.50808e-12</Hsp_evalue> - <Hsp_query-from>312</Hsp_query-from> - <Hsp_query-to>337</Hsp_query-to> - <Hsp_hit-from>4222</Hsp_hit-from> - <Hsp_hit-to>4299</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>23</Hsp_identity> - <Hsp_positive>24</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>26</Hsp_align-len> - <Hsp_qseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_qseq> - <Hsp_hseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_hseq> - <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>18</Statistics_hsp-len> - <Statistics_eff-space>109230</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>22</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>348</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>983</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>658.198</Hsp_bit-score> - <Hsp_score>1517</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>11</Hsp_query-from> - <Hsp_query-to>336</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>978</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>310</Hsp_identity> - <Hsp_positive>322</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>326</Hsp_align-len> - <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_qseq> - <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_hseq> - <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>18</Statistics_hsp-len> - <Statistics_eff-space>109230</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>23</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>348</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_5</Hit_id> - <Hit_def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Hit_def> - <Hit_accession>Subject_5</Hit_accession> - <Hit_len>1047</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>711.256</Hsp_bit-score> - <Hsp_score>1640</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>348</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>1044</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>1</Hsp_hit-frame> - <Hsp_identity>325</Hsp_identity> - <Hsp_positive>337</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>348</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq> - <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>18</Statistics_hsp-len> - <Statistics_eff-space>109230</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>24</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> - <Iteration_query-len>348</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_6</Hit_id> - <Hit_def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Hit_def> - <Hit_accession>Subject_6</Hit_accession> - <Hit_len>1344</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>626.708</Hsp_bit-score> - <Hsp_score>1444</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>341</Hsp_query-to> - <Hsp_hit-from>23</Hsp_hit-from> - <Hsp_hit-to>1048</Hsp_hit-to> - <Hsp_query-frame>0</Hsp_query-frame> - <Hsp_hit-frame>2</Hsp_hit-frame> - <Hsp_identity>281</Hsp_identity> - <Hsp_positive>311</Hsp_positive> - <Hsp_gaps>1</Hsp_gaps> - <Hsp_align-len>342</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq> - <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>18</Statistics_hsp-len> - <Statistics_eff-space>109230</Statistics_eff-space> - <Statistics_kappa>0.071</Statistics_kappa> - <Statistics_lambda>0.299</Statistics_lambda> - <Statistics_entropy>0.27</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - </BlastOutput_iterations> -</BlastOutput> \ No newline at end of file +<BlastOutput_iterations> +<Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>406</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>19</Statistics_hsp-len> + <Statistics_eff-space>127710</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>2</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>406</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>19</Statistics_hsp-len> + <Statistics_eff-space>127710</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>3</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>406</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>19</Statistics_hsp-len> + <Statistics_eff-space>127710</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>4</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>406</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>19</Statistics_hsp-len> + <Statistics_eff-space>127710</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>5</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>406</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>19</Statistics_hsp-len> + <Statistics_eff-space>127710</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>6</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>406</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>19</Statistics_hsp-len> + <Statistics_eff-space>127710</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>7</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> + <Iteration_query-len>1161</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>23</Statistics_hsp-len> + <Statistics_eff-space>370988</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>8</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> + <Iteration_query-len>1161</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>23</Statistics_hsp-len> + <Statistics_eff-space>370988</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>9</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> + <Iteration_query-len>1161</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>23</Statistics_hsp-len> + <Statistics_eff-space>370988</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>10</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> + <Iteration_query-len>1161</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>23</Statistics_hsp-len> + <Statistics_eff-space>370988</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>11</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> + <Iteration_query-len>1161</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>23</Statistics_hsp-len> + <Statistics_eff-space>370988</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>12</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> + <Iteration_query-len>1161</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>23</Statistics_hsp-len> + <Statistics_eff-space>370988</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>13</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> + <Iteration_query-len>1382</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>24</Statistics_hsp-len> + <Statistics_eff-space>441350</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>14</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> + <Iteration_query-len>1382</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>24</Statistics_hsp-len> + <Statistics_eff-space>441350</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>15</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> + <Iteration_query-len>1382</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>24</Statistics_hsp-len> + <Statistics_eff-space>441350</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>16</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> + <Iteration_query-len>1382</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>24</Statistics_hsp-len> + <Statistics_eff-space>441350</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>17</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> + <Iteration_query-len>1382</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>24</Statistics_hsp-len> + <Statistics_eff-space>441350</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>18</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> + <Iteration_query-len>1382</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>24</Statistics_hsp-len> + <Statistics_eff-space>441350</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>19</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>348</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_1</Hit_id> + <Hit_def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Hit_def> + <Hit_accession>Subject_1</Hit_accession> + <Hit_len>1047</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>732.393</Hsp_bit-score> + <Hsp_score>1689</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>348</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>1044</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>336</Hsp_identity> + <Hsp_positive>343</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>348</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq> + <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>18</Statistics_hsp-len> + <Statistics_eff-space>109230</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>20</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>348</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_2</Hit_id> + <Hit_def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Hit_def> + <Hit_accession>Subject_2</Hit_accession> + <Hit_len>1574</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>646.12</Hsp_bit-score> + <Hsp_score>1489</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>341</Hsp_query-to> + <Hsp_hit-from>42</Hsp_hit-from> + <Hsp_hit-to>1067</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>3</Hsp_hit-frame> + <Hsp_identity>290</Hsp_identity> + <Hsp_positive>320</Hsp_positive> + <Hsp_gaps>1</Hsp_gaps> + <Hsp_align-len>342</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq> + <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>18</Statistics_hsp-len> + <Statistics_eff-space>109230</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>21</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>348</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_3</Hit_id> + <Hit_def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Hit_def> + <Hit_accession>Subject_3</Hit_accession> + <Hit_len>4301</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>151.343</Hsp_bit-score> + <Hsp_score>342</Hsp_score> + <Hsp_evalue>1.39567e-72</Hsp_evalue> + <Hsp_query-from>239</Hsp_query-from> + <Hsp_query-to>312</Hsp_query-to> + <Hsp_hit-from>3147</Hsp_hit-from> + <Hsp_hit-to>3368</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>3</Hsp_hit-frame> + <Hsp_identity>69</Hsp_identity> + <Hsp_positive>73</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>74</Hsp_align-len> + <Hsp_qseq>ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_qseq> + <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq> + <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>126.324</Hsp_bit-score> + <Hsp_score>284</Hsp_score> + <Hsp_evalue>1.39567e-72</Hsp_evalue> + <Hsp_query-from>177</Hsp_query-from> + <Hsp_query-to>235</Hsp_query-to> + <Hsp_hit-from>2855</Hsp_hit-from> + <Hsp_hit-to>3031</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>2</Hsp_hit-frame> + <Hsp_identity>54</Hsp_identity> + <Hsp_positive>57</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>59</Hsp_align-len> + <Hsp_qseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_qseq> + <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq> + <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>229.42</Hsp_bit-score> + <Hsp_score>523</Hsp_score> + <Hsp_evalue>9.34154e-67</Hsp_evalue> + <Hsp_query-from>11</Hsp_query-from> + <Hsp_query-to>121</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>333</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>107</Hsp_identity> + <Hsp_positive>109</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>111</Hsp_align-len> + <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> + <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> + <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>122.873</Hsp_bit-score> + <Hsp_score>276</Hsp_score> + <Hsp_evalue>1.03783e-32</Hsp_evalue> + <Hsp_query-from>119</Hsp_query-from> + <Hsp_query-to>177</Hsp_query-to> + <Hsp_hit-from>1404</Hsp_hit-from> + <Hsp_hit-to>1580</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>3</Hsp_hit-frame> + <Hsp_identity>55</Hsp_identity> + <Hsp_positive>56</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>59</Hsp_align-len> + <Hsp_qseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_qseq> + <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq> + <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>57.7368</Hsp_bit-score> + <Hsp_score>125</Hsp_score> + <Hsp_evalue>1.50808e-12</Hsp_evalue> + <Hsp_query-from>312</Hsp_query-from> + <Hsp_query-to>337</Hsp_query-to> + <Hsp_hit-from>4222</Hsp_hit-from> + <Hsp_hit-to>4299</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>23</Hsp_identity> + <Hsp_positive>24</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>26</Hsp_align-len> + <Hsp_qseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_qseq> + <Hsp_hseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_hseq> + <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>18</Statistics_hsp-len> + <Statistics_eff-space>109230</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>22</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>348</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>983</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>658.198</Hsp_bit-score> + <Hsp_score>1517</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>11</Hsp_query-from> + <Hsp_query-to>336</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>978</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>310</Hsp_identity> + <Hsp_positive>322</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>326</Hsp_align-len> + <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_qseq> + <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_hseq> + <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>18</Statistics_hsp-len> + <Statistics_eff-space>109230</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>23</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>348</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_5</Hit_id> + <Hit_def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Hit_def> + <Hit_accession>Subject_5</Hit_accession> + <Hit_len>1047</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>711.256</Hsp_bit-score> + <Hsp_score>1640</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>348</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>1044</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>325</Hsp_identity> + <Hsp_positive>337</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>348</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq> + <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>18</Statistics_hsp-len> + <Statistics_eff-space>109230</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>24</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> + <Iteration_query-len>348</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_6</Hit_id> + <Hit_def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Hit_def> + <Hit_accession>Subject_6</Hit_accession> + <Hit_len>1344</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>626.708</Hsp_bit-score> + <Hsp_score>1444</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>341</Hsp_query-to> + <Hsp_hit-from>23</Hsp_hit-from> + <Hsp_hit-to>1048</Hsp_hit-to> + <Hsp_query-frame>0</Hsp_query-frame> + <Hsp_hit-frame>2</Hsp_hit-frame> + <Hsp_identity>281</Hsp_identity> + <Hsp_positive>311</Hsp_positive> + <Hsp_gaps>1</Hsp_gaps> + <Hsp_align-len>342</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq> + <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>18</Statistics_hsp-len> + <Statistics_eff-space>109230</Statistics_eff-space> + <Statistics_kappa>0.071</Statistics_kappa> + <Statistics_lambda>0.299</Statistics_lambda> + <Statistics_entropy>0.27</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +</BlastOutput_iterations> +</BlastOutput> +
--- a/tools/ncbi_blast_plus/README.rst Mon Nov 25 10:58:46 2013 -0500 +++ b/tools/ncbi_blast_plus/README.rst Thu Nov 28 08:50:15 2013 -0500 @@ -5,7 +5,7 @@ (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below. -Currently tested with NCBI BLAST 2.2.27+ (i.e. version 2.2.27 of BLAST+), +Currently tested with NCBI BLAST 2.2.28+ (i.e. version 2.2.28 of BLAST+), and does not work with the NCBI 'legacy' BLAST suite (e.g. blastall). Note that these wrappers (and the associated datatypes) were originally @@ -71,7 +71,7 @@ about any system level BLAST databases using the tool-data/blastdb*.loc files. You must install the NCBI BLAST+ standalone tools somewhere on the system -path. Currently the unit tests are written using "BLAST 2.2.27+". +path. Currently the unit tests are written using "BLAST 2.2.28+". Run the functional tests (adjusting the section identifier to match your tool_conf.xml.sample file):: @@ -131,6 +131,9 @@ - Set number of threads via $GALAXY_SLOTS environment variable - More descriptive default output names - Tests require updated BLAST DB definitions (blast_datatypes v0.0.18) + - Pre-check for duplicate identifiers in makeblastdb wrapper. + - Tests updated for BLAST+ 2.2.28 instead of BLAST+ 2.2.27 + - Now depends on package_blast_plus_2_2_28 in ToolShed ======= ======================================================================
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/ncbi_blast_plus/check_no_duplicates.py Thu Nov 28 08:50:15 2013 -0500 @@ -0,0 +1,46 @@ +#!/usr/bin/env python +"""Check for duplicate sequence identifiers in FASTA files. + +This is run as a pre-check before makeblastdb, in order to avoid +a regression bug in BLAST+ 2.2.28 which fails to catch this. See: +http://blastedbio.blogspot.co.uk/2012/10/my-ids-not-good-enough-for-ncbi-blast.html + +This script takes one or more FASTA filenames as input, and +will return a non-zero error if any duplicate identifiers +are found. +""" +import sys +import os + +if "-v" in sys.argv or "--version" in sys.argv: + print("v0.0.22") + sys.exit(0) + +def stop_err(msg, error=1): + sys.stderr.write("%s\n" % msg) + sys.exit(error) + + +identifiers = set() +files = 0 +for filename in sys.argv[1:]: + if not os.path.isfile(filename): + stop_err("Missing FASTA file %r" % filename, 2) + files += 1 + handle = open(filename) + for line in handle: + if line.startswith(">"): + #The split will also take care of the new line character, + #e.g. ">test\n" and ">test description here\n" both give "test" + seq_id = line[1:].split(None, 1)[0] + if seq_id in identifiers: + handle.close() + stop_err("Repeated identifiers, e.g. %r" % seq_id, 1) + identifiers.add(seq_id) + handle.close() +if not files: + stop_err("No FASTA files given to check for duplicates", 3) +elif files == 1: + print("%i sequences" % len(identifiers)) +else: + print("%i sequences in %i FASTA files" % (len(identifiers), files))
--- a/tools/ncbi_blast_plus/ncbi_macros.xml Mon Nov 25 10:58:46 2013 -0500 +++ b/tools/ncbi_blast_plus/ncbi_macros.xml Thu Nov 28 08:50:15 2013 -0500 @@ -240,7 +240,7 @@ <xml name="requirements"> <requirements> <requirement type="binary">@BINARY@</requirement> - <requirement type="package" version="2.2.27">blast+</requirement> + <requirement type="package" version="2.2.28">blast+</requirement> </requirements> <version_command>@BINARY@ -version</version_command> </xml>
--- a/tools/ncbi_blast_plus/ncbi_makeblastdb.xml Mon Nov 25 10:58:46 2013 -0500 +++ b/tools/ncbi_blast_plus/ncbi_makeblastdb.xml Thu Nov 28 08:50:15 2013 -0500 @@ -5,7 +5,13 @@ <import>ncbi_macros.xml</import> </macros> <expand macro="requirements" /> - <command> + <command interpreter="python">check_no_duplicates.py +##First check for duplicates (since BLAST+ 2.2.28 fails to do so) +##and abort (via the ampersand ampersand trick) if any are found. +#for $i in $in +"${i.file}" +#end for +&& makeblastdb -out "${os.path.join($outfile.extra_files_path,'blastdb')}" $parse_seqids $hash_index