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1 <tool id="order_by_clustering" name="Re-order Data Matrix by Cluster Analysis" force_history_refresh="True">
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2 <command interpreter="python">order.by.cl.py
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3 -d $dataset
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4 -c ${class_select}
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5 ${genes_only}
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6 ${within_cl_srt}
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7 -o ${output}
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8
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9 </command>
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10 <inputs>
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11 <param name="dataset" type="data" format="tabular" label="Matrix"/>
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12 <param name="class_select" type="data" format="rdata" label="Cluster result (rdata file)"/>
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13 <param name="genes_only" type="boolean" label="Genes Only?" truevalue="-g" falsevalue="" checked="False"/>
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14 <param name="within_cl_srt" type="boolean" label="Sort within-cluster members?" truevalue="-w" falsevalue="" checked="True"/>
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15 </inputs>
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16 <outputs>
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17 <data format="tabular" name="output" label="Matrix Re-ordered by clusters"/>
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18 </outputs>
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19 <help>
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20 .. class:: infomark
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21
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22 **Re-order Data Matrix by Cluster Analysis** - Tool to convert a data matrix into a simplified CDT format that can be read by TreeView
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23
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24 **OUTPUT:** A new Matrix, ordered by cluster membership
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25
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26 ----
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27
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28 **Parameters**
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29
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30 - **Matrix in tab-delimited format** Tab-delimited file
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31
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32 </help>
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33 </tool>
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