Mercurial > repos > peter-waltman > ucsc_cluster_tools
comparison cluster.tools/order.by.cl.xml @ 2:b442996b66ae draft
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author | peter-waltman |
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date | Wed, 27 Feb 2013 20:17:04 -0500 |
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1:e25d2bece0a2 | 2:b442996b66ae |
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1 <tool id="order_by_clustering" name="Re-order Data Matrix by Cluster Analysis" force_history_refresh="True"> | |
2 <command interpreter="python">order.by.cl.py | |
3 -d $dataset | |
4 -c ${class_select} | |
5 ${genes_only} | |
6 ${within_cl_srt} | |
7 -o ${output} | |
8 | |
9 </command> | |
10 <inputs> | |
11 <param name="dataset" type="data" format="tabular" label="Matrix"/> | |
12 <param name="class_select" type="data" format="rdata" label="Cluster result (rdata file)"/> | |
13 <param name="genes_only" type="boolean" label="Genes Only?" truevalue="-g" falsevalue="" checked="False"/> | |
14 <param name="within_cl_srt" type="boolean" label="Sort within-cluster members?" truevalue="-w" falsevalue="" checked="True"/> | |
15 </inputs> | |
16 <outputs> | |
17 <data format="tabular" name="output" label="Matrix Re-ordered by clusters"/> | |
18 </outputs> | |
19 <help> | |
20 .. class:: infomark | |
21 | |
22 **Re-order Data Matrix by Cluster Analysis** - Tool to convert a data matrix into a simplified CDT format that can be read by TreeView | |
23 | |
24 **OUTPUT:** A new Matrix, ordered by cluster membership | |
25 | |
26 ---- | |
27 | |
28 **Parameters** | |
29 | |
30 - **Matrix in tab-delimited format** Tab-delimited file | |
31 | |
32 </help> | |
33 </tool> |