view cluster.tools/order.by.cl.xml @ 2:b442996b66ae draft

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<tool id="order_by_clustering" name="Re-order Data Matrix by Cluster Analysis" force_history_refresh="True">
    <command interpreter="python">order.by.cl.py
-d $dataset 
-c ${class_select}
${genes_only}
${within_cl_srt}
-o ${output}

</command>
    <inputs>
    	<param name="dataset" type="data" format="tabular" label="Matrix"/>
    	<param name="class_select" type="data" format="rdata" label="Cluster result (rdata file)"/>
	<param name="genes_only" type="boolean" label="Genes Only?" truevalue="-g" falsevalue="" checked="False"/>
	<param name="within_cl_srt" type="boolean" label="Sort within-cluster members?" truevalue="-w" falsevalue="" checked="True"/>
    </inputs>
    <outputs>
        <data format="tabular" name="output" label="Matrix Re-ordered by clusters"/>
    </outputs>
<help>
.. class:: infomark
     
**Re-order Data Matrix by Cluster Analysis** - Tool to convert a data matrix into a simplified CDT format that can be read by TreeView

**OUTPUT:**  A new Matrix, ordered by cluster membership

----

**Parameters**

- **Matrix in tab-delimited format** Tab-delimited file

</help>
</tool>