annotate tool_dependencies.xml @ 9:e28ddf991f42 draft default tip

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date Tue, 26 May 2015 09:46:04 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="3.1.0">
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4 <repository changeset_revision="cfa09c247b6e" name="package_r_3_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="deseq2" version="1.6.1">
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7 <repository changeset_revision="5beee6b62be7" name="package_deseq2_1_6_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="diffbind" version="1.14.4">
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10 <install version="1.0">
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11 <actions>
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12 <action type="setup_r_environment">
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13 <repository changeset_revision="cfa09c247b6e" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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14 <package name="R" version="3.1.0" />
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15 </repository>
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16 <repository changeset_revision="5beee6b62be7" name="package_deseq2_1_6_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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17 <package name="deseq2" version="1.6.1" />
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18 </repository>
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19 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/limma_3.18.9.tar.gz</package>
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20 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Biostrings_2.30.1.tar.gz</package>
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21 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/amap_0.8-7.tar.gz</package>
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22 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/edgeR_3.4.2.tar.gz</package>
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23 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/zlibbioc_1.8.0.tar.gz</package>
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24 <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Rsamtools_1.14.2.tar.gz</package>
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25 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.4.1.tar.gz</package>
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26 <package>http://bioconductor.org/packages/release/bioc/src/contrib/ShortRead_1.26.0.tar.gz</package>
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27 <package>http://bioconductor.org/packages/release/bioc/src/contrib/systemPipeR_1.2.1.tar.gz</package>
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28 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/DiffBind_1.14.4.tar.gz</package>
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29 </action>
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30 </actions>
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31 </install>
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32 <readme>
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33 Differential Binding Analysis of ChIP-Seq peak data
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34 http://www.bioconductor.org/packages/release/bioc/html/DiffBind.html
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35 </readme>
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36 </package>
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37 </tool_dependency>