Mercurial > repos > pavanvidem > diffbind

changeset 9:e28ddf991f42 draft default tip

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Uploaded
author pavanvidem
date Tue, 26 May 2015 09:46:04 -0400
parents 788b8d1f31b2
children
files diffbind.xml tool_dependencies.xml
diffstat 2 files changed, 1 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/diffbind.xml	Tue May 26 09:36:21 2015 -0400
+++ b/diffbind.xml	Tue May 26 09:46:04 2015 -0400
@@ -1,10 +1,8 @@
 <tool id="diffbind" name="DiffBind" version="2.0.3">
     <description> differential binding analysis of ChIP-Seq peak data</description>
     <requirements>
-        <requirement type="binary">Rscript</requirement>
-        <requirement type="R-module">DESeq2</requirement>
         <requirement type="package" version="3.1.0">R</requirement>
-        <requirement type="package" version="1.2.10">deseq2</requirement>
+        <requirement type="package" version="1.6.1">deseq2</requirement>
         <requirement type="package" version="1.14.4">diffbind</requirement>
     </requirements>
     <command>
--- a/tool_dependencies.xml	Tue May 26 09:36:21 2015 -0400
+++ b/tool_dependencies.xml	Tue May 26 09:46:04 2015 -0400
@@ -6,9 +6,6 @@
     <package name="deseq2" version="1.6.1">
         <repository changeset_revision="5beee6b62be7" name="package_deseq2_1_6_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="libxml2" version="2.9.1">
-        <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
     <package name="diffbind" version="1.14.4">
         <install version="1.0">
             <actions>
@@ -16,9 +13,6 @@
                     <repository changeset_revision="cfa09c247b6e" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="R" version="3.1.0" />
                     </repository>
-                    <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
-                        <package name="libxml2" version="2.9.1" />
-                    </repository>
                     <repository changeset_revision="5beee6b62be7" name="package_deseq2_1_6_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="deseq2" version="1.6.1" />
                     </repository>