Mercurial > repos > nilesh > eautils

diff fastq-join.xml @ 1:6dd8062546e8 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
fixed xmls
author nilesh
date Mon, 15 Jul 2013 21:50:45 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fastq-join.xml	Mon Jul 15 21:50:45 2013 -0500
@@ -0,0 +1,29 @@
+<tool id="fast-join" name="fastq join">
+	<description>Fastq-join: merge overlapping parked end reads</description>
+	<requirements>
+		<requirement type="package" version="1.2.8">zlib</requirement>
+		<requirement type="package" version="0.7.5a">bwa</requirement>
+	</requirements>
+	<command interpreter="python">
+		fastq-join $input1 $input2 -o $output1 -o $output2 -o $output3 
+
+	</command>
+
+	<inputs>
+
+		<param name="input1" type="data"  format="fastq" label="Source file 1"/>
+		<param name="input2" type="data" format="fastq" label="Source file 2"/>
+	</inputs>
+
+	<outputs>
+    		<data format="txt" name="output1" label="output file un1"/>
+    		<data format="txt" name="output2" label="output file un2"/>
+    		<data format="txt" name="output3" label="output file join"/>
+
+	</outputs>
+
+  <help>
+This tool computes GC content from a FASTA file.
+  </help>
+
+</tool>