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1 <tool id="fast-join" name="fastq join">
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2 <description>Fastq-join: merge overlapping parked end reads</description>
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3 <requirements>
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4 <requirement type="package" version="1.2.8">zlib</requirement>
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5 <requirement type="package" version="0.7.5a">bwa</requirement>
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6 </requirements>
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7 <command interpreter="python">
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8 fastq-join $input1 $input2 -o $output1 -o $output2 -o $output3
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9
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10 </command>
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11
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12 <inputs>
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13
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14 <param name="input1" type="data" format="fastq" label="Source file 1"/>
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15 <param name="input2" type="data" format="fastq" label="Source file 2"/>
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16 </inputs>
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17
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18 <outputs>
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19 <data format="txt" name="output1" label="output file un1"/>
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20 <data format="txt" name="output2" label="output file un2"/>
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21 <data format="txt" name="output3" label="output file join"/>
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22
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23 </outputs>
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24
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25 <help>
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26 This tool computes GC content from a FASTA file.
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27 </help>
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28
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29 </tool>
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