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changeset 19:fc7f090fd00b draft

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Deleted selected files
author nikos
date Tue, 09 Sep 2014 10:29:47 -0400
parents a47f03c50780
children 3dede45026d7
files test-data/.DS_Store test-data/._.DS_Store test-data/1.bed test-data/1.bigwig test-data/1.fasta test-data/1.tabular test-data/1.txt test-data/2.bed test-data/2.tabular test-data/3.bed test-data/3.tabular test-data/4.bed test-data/4.tabular test-data/test-data/1.fasta test-data/test-data/3.tabular test-data/test-data/4.tabular
diffstat 16 files changed, 0 insertions(+), 151 deletions(-) [+]
line wrap: on
line diff
Binary file test-data/.DS_Store has changed
Binary file test-data/._.DS_Store has changed
--- a/test-data/1.bed	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,5 +0,0 @@
-chr19	50178708	50180708
-chr6	90348174	90350174
-chr16	58495848	58497848
-chr5	180580242	180582242
-chr9	120177017	120179017
Binary file test-data/1.bigwig has changed
--- a/test-data/1.fasta	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,50 +0,0 @@
->HSFAU1
-ttcctctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgc
-agctctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcg
-cccagatcaaggctcatgtagcctcactggagggcattgccccggaagatcaagtcgtgc
-tcctggcaggccccctggaggatgaggccactctgggccagtgcggggtggaggccc
-tgactaccctggaagtagcaggccgcatgcttggaggtaaagttcatggttccctggccc
-gtgctggaaaagtgagaggtcagactcctaaggtggccaaacaggagaagaagaagaaga
-agacaggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgccca
-cctttggcaagaagaagggccccaatgccaactcttaagtcttttgtaattctggctttc
-tctaataaaaaagccacttagttcagtcaaaaaaaaaa
->HSFAU2
-ttcctctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgc
-agctctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcg
-cccagatcaaggctcatgtagcctcactggagggcattgccccggaagatcaagtcgtgc
-tcctggcaggcgcgcccctggaggatgcactctgggccagtgcggggtggaggccc
-tgactaccctggaagtagcaggccgcatgcttggaggtaaagttcatggttccctggccc
-gtgctggaaaagtgagaggtcagactcctaaggtggccaaacaggagaagaagaagaaga
-agacaggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgccca
-cctttggcaagaagaagggccccaatgccaactcttaagtcttttgtaattctggctttc
-tctaataaaaaagccacttagttcagtcaaaaaaaaaa
->HSFAU3
-ttcctctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgc
-agctctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcg
-cccagatcaaggctcatgtagcctcactggagggcattgccccggaagatcaagtcgtgc
-tcctggcaggcgcgcccctggaggatgaggccactctgggccagtgcggggtggaggccc
-tgactaccctggaagtagcaggccgcatgcttggaggtaaagttcatggttccctggccc
-gtgctggaaaagtgagaggtcagactcctaagggggccaaacaggagaagaagaagaaga
-agacaggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgccca
-cctttggcaagaagaagggccccaatgccaactcttaagtcttttgtaattctggctttc
-tctaataaaaaagccacttagttcagtcaaaaaaaaaa
->HSFAU4
-ttcctctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgc
-agctctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcg
-cccagatcaaggctcatgaaatagcctcactggagggcattgccccggaagatcaagtcgtgc
-tcctggcaggcgcgcccctggaggatgaggccactctgggccagtgcggggtggaggccc
-tgactaccctggaagtagcaggccgcatgcttgcccgaggtaaagttcatggttccctggccc
-gtgctggaaaagtgagaggtcagactcctaaggtggccaaacaggagaagaagaagaaga
-agacaggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgccca
-cctttggcaagaagaagggccccaatgccaactcttaagtcttttgtaattctggctttc
-tctaataaaaaagccacttagttcagtcaaaaaaaaaa
->HSFAU5
-ttcctctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgc
-agctctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcg
-cccagatcaaggctcatgtagcctcactggagggcattgccccggaagatcaagtcgtgc
-tcctggcaggcgcgcccctggaggatgaggccactctgggccagtgcggggtggaggccc
-tgactaccctggaagtaggccgcatgctttttggaggtaaagttcatggttccctggccc
-gtgctggaaaagtgagaggtcagactcctaaggtggccaaacaggagaagaagaagaaga
-agacaggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgccca
-cctttggcaagaagaagggccccaatgccaactcttaagtcttttgtaattctggctttc
-tctaataaaaaagccacttagttcagtcaaaaaaaaaa
\ No newline at end of file
--- a/test-data/1.tabular	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-0.144886	0	0
-0.507327	1.14649	1.38456
-0.221471	0.144886	0.309857
-0.348944	0.426638	0.244495
--- a/test-data/1.txt	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-0.796113	0.273952	0.437672
--- a/test-data/2.bed	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,5 +0,0 @@
-chr19	50178708	50180708	NM_198318	0	+	PRMT1
-chr6	90348174	90350174	NM_020466	0	-	LYRM2
-chr16	58495848	58497848	NM_020465	0	+	NDRG4
-chr5	180580242	180582242	NM_206880	0	+	OR2V2
-chr9	120177017	120179017	NM_014010	0	-	ASTN2
--- a/test-data/2.tabular	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-0	0	0	0.144886	0
-0.396878	0.970009	1.1091	1.17538	1.40612
-0.203829	0.21262	0.144886	0.409996	0.274558
-0.180424	0.430989	0.458898	0.35171	0.307157
--- a/test-data/3.bed	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-chr19	50178708	50180708
-chr21	48119895	48139895
-chr6	90348174	90350174
-chr16	58495848	58497848
-chr5	180580242	180582242
-chr17	81194210	81196210
-chr9	120177017	120179017  
--- a/test-data/3.tabular	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-#seq	len	A	C	G	T	N	cpg
-HSFAU1	515	125	138	146	106	0	23
-HSFAU2	514	124	138	146	106	0	25
-HSFAU3	518	125	139	149	105	0	25
-HSFAU4	524	128	142	148	106	0	26
-HSFAU5	518	124	138	147	109	0	25
-total	2589	626	695	736	532	0	124
--- a/test-data/4.bed	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,5 +0,0 @@
-chr19 50178708 50183708 NM_198318 0 + PRMT1
-chr6 90345174 90350174 NM_020466 0 - LYRM2
-chr16 58495848 58500848 NM_020465 0 + NDRG4
-chr5 180580242 180585242 NM_206880 0 + OR2V2
-chr9 120174017 120179017 NM_014010 0 - ASTN2
--- a/test-data/4.tabular	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,3 +0,0 @@
-#seq	len	A	C	G	T	N	cpg	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
-total	5178	1158	1431	1431	1158	0	248	360	238	408	142	328	447	248	408	320	426	447	238	150	320	328	360
-prcnt	1.0  	0.2236	0.2764	0.2764	0.2236	0.0000	0.0479	0.0695	0.0460	0.0788	0.0274	0.0633	0.0863	0.0479	0.0788	0.0618	0.0823	0.0863	0.0460	0.0290	0.0618	0.0633	0.0695
--- a/test-data/test-data/1.fasta	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,50 +0,0 @@
->HSFAU1
-ttcctctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgc
-agctctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcg
-cccagatcaaggctcatgtagcctcactggagggcattgccccggaagatcaagtcgtgc
-tcctggcaggccccctggaggatgaggccactctgggccagtgcggggtggaggccc
-tgactaccctggaagtagcaggccgcatgcttggaggtaaagttcatggttccctggccc
-gtgctggaaaagtgagaggtcagactcctaaggtggccaaacaggagaagaagaagaaga
-agacaggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgccca
-cctttggcaagaagaagggccccaatgccaactcttaagtcttttgtaattctggctttc
-tctaataaaaaagccacttagttcagtcaaaaaaaaaa
->HSFAU2
-ttcctctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgc
-agctctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcg
-cccagatcaaggctcatgtagcctcactggagggcattgccccggaagatcaagtcgtgc
-tcctggcaggcgcgcccctggaggatgcactctgggccagtgcggggtggaggccc
-tgactaccctggaagtagcaggccgcatgcttggaggtaaagttcatggttccctggccc
-gtgctggaaaagtgagaggtcagactcctaaggtggccaaacaggagaagaagaagaaga
-agacaggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgccca
-cctttggcaagaagaagggccccaatgccaactcttaagtcttttgtaattctggctttc
-tctaataaaaaagccacttagttcagtcaaaaaaaaaa
->HSFAU3
-ttcctctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgc
-agctctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcg
-cccagatcaaggctcatgtagcctcactggagggcattgccccggaagatcaagtcgtgc
-tcctggcaggcgcgcccctggaggatgaggccactctgggccagtgcggggtggaggccc
-tgactaccctggaagtagcaggccgcatgcttggaggtaaagttcatggttccctggccc
-gtgctggaaaagtgagaggtcagactcctaagggggccaaacaggagaagaagaagaaga
-agacaggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgccca
-cctttggcaagaagaagggccccaatgccaactcttaagtcttttgtaattctggctttc
-tctaataaaaaagccacttagttcagtcaaaaaaaaaa
->HSFAU4
-ttcctctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgc
-agctctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcg
-cccagatcaaggctcatgaaatagcctcactggagggcattgccccggaagatcaagtcgtgc
-tcctggcaggcgcgcccctggaggatgaggccactctgggccagtgcggggtggaggccc
-tgactaccctggaagtagcaggccgcatgcttgcccgaggtaaagttcatggttccctggccc
-gtgctggaaaagtgagaggtcagactcctaaggtggccaaacaggagaagaagaagaaga
-agacaggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgccca
-cctttggcaagaagaagggccccaatgccaactcttaagtcttttgtaattctggctttc
-tctaataaaaaagccacttagttcagtcaaaaaaaaaa
->HSFAU5
-ttcctctttctcgactccatcttcgcggtagctgggaccgccgttcagtcgccaatatgc
-agctctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcg
-cccagatcaaggctcatgtagcctcactggagggcattgccccggaagatcaagtcgtgc
-tcctggcaggcgcgcccctggaggatgaggccactctgggccagtgcggggtggaggccc
-tgactaccctggaagtaggccgcatgctttttggaggtaaagttcatggttccctggccc
-gtgctggaaaagtgagaggtcagactcctaaggtggccaaacaggagaagaagaagaaga
-agacaggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgccca
-cctttggcaagaagaagggccccaatgccaactcttaagtcttttgtaattctggctttc
-tctaataaaaaagccacttagttcagtcaaaaaaaaaa
\ No newline at end of file
--- a/test-data/test-data/3.tabular	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-#seq	len	A	C	G	T	N	cpg
-HSFAU1	515	125	138	146	106	0	23
-HSFAU2	514	124	138	146	106	0	25
-HSFAU3	518	125	139	149	105	0	25
-HSFAU4	524	128	142	148	106	0	26
-HSFAU5	518	124	138	147	109	0	25
-total	2589	626	695	736	532	0	124
--- a/test-data/test-data/4.tabular	Tue Sep 09 10:28:01 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,3 +0,0 @@
-#seq	len	A	C	G	T	N	cpg	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
-total	5178	1158	1431	1431	1158	0	248	360	238	408	142	328	447	248	408	320	426	447	238	150	320	328	360
-prcnt	1.0  	0.2236	0.2764	0.2764	0.2236	0.0000	0.0479	0.0695	0.0460	0.0788	0.0274	0.0633	0.0863	0.0479	0.0788	0.0618	0.0823	0.0863	0.0460	0.0290	0.0618	0.0633	0.0695