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1 <tool id="hetbox" version="1.0" name="Minor variant boxplot">
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2 <description> from allele counts</description>
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3 <command interpreter="python">hetbox.py $input $outplot $outreport
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4 </command>
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5 <inputs>
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6 <param name="input" type="data" format="tabular" label="Input allele counts"/>
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7 <param name="report" type="boolean" truevalue="yes" falsevalue="no" checked="True label="Also produce a text report" />
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8 </inputs>
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9 <outputs>
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10 <data name="outplot" format="png"/>
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11 <data name="outreport" format="tabular">
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12 <filter>report is True</filter>
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13 </data>
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14 </outputs>
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15
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16 <help>
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17
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18 .. class:: infomark
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19
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20 **What it does**
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21
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22 This will create a boxplot from the output of the "Count alleles" tool, showing the number of minor alleles per sample and the distribution of their frequencies (MAF). It can also, optionally, produce a textual report with these numbers.
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23
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24 </help>
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25
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26 <requirements>
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27 <requirement type="package" version="1.7.1">numpy</requirement>
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28 </requirements>
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29 </tool> |
