Mercurial > repos > nick > minor_variant_boxplot

changeset 5:d38113d9c4d6 draft

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current xml version
author nick
date Thu, 30 May 2013 15:41:55 -0400
parents dfa2e75da6aa
children 99cda2ff12b8
files hetbox.xml
diffstat 1 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/hetbox.xml	Thu May 30 15:41:27 2013 -0400
+++ b/hetbox.xml	Thu May 30 15:41:55 2013 -0400
@@ -1,13 +1,16 @@
 <tool id="hetbox" version="1.0" name="Minor variant boxplot">
   <description> from allele counts</description>
-  <command interpreter="python">hetbox.py $input $outplot $outreport $report</command>
+  <command interpreter="python">hetbox.py $input $outplot $outreport
+  </command>
   <inputs>
     <param name="input" type="data" format="tabular" label="Input allele counts"/>
-    <param name="report" type="boolean" truevalue="-r" falsevalue="" checked="False" label="Also produce a text report" />
+    <param name="report" type="boolean" truevalue="yes" falsevalue="no" checked="True label="Also produce a text report" />
   </inputs>
   <outputs>
     <data name="outplot" format="png"/>
-    <data name="outreport" format="tabular"/>
+    <data name="outreport" format="tabular">
+      <filter>report is True</filter>
+    </data>
   </outputs>
 
   <help>
@@ -16,7 +19,7 @@
 
 **What it does**
 
-    This will create a boxplot from the output of the "Count alleles" tool, showing the number of minor alleles per sample and the distribution of their frequencies (MAF). It can also, optionally, produce a textual report with these numbers.
+This will create a boxplot from the output of the "Count alleles" tool, showing the number of minor alleles per sample and the distribution of their frequencies (MAF). It can also, optionally, produce a textual report with these numbers.
 
   </help>