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1 <tool id="hetbox" version="1.0" name="Minor variant boxplot">
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2 <description> from allele counts</description>
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3 <command interpreter="python">hetbox.py $input $outplot $outreport $report</command>
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4 <inputs>
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5 <param name="input" type="data" format="tabular" label="Input allele counts"/>
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6 <param name="report" type="boolean" truevalue="-r" falsevalue="" checked="False" label="Also produce a text report" />
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7 </inputs>
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8 <outputs>
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9 <data name="outplot" format="png"/>
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10 <data name="outreport" format="tabular"/>
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11 </outputs>
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12
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13 <help>
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14
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15 .. class:: infomark
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16
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17 **What it does**
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18
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19 This will create a boxplot from the output of the "Count alleles" tool, showing the number of minor alleles per sample and the distribution of their frequencies (MAF). It can also, optionally, produce a textual report with these numbers.
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20
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21 </help>
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22
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23 <requirements>
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24 <requirement type="package" version="1.7.1">numpy</requirement>
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25 </requirements>
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26 </tool> |
