comparison hetbox.xml @ 3:e9c34ef993d6 draft

Wrote some documentation

2:3a1ce69571e5

<tool id="hetbox" version="1.0" name="Minor variant boxplot">
  <description></description>
  <command interpreter="python">hetbox.py $input $outplot $outreport $report</command>
  <inputs>
    <param name="input" type="data" format="tabular" label="Input allele counts file"/>
    <param name="report" type="boolean" truevalue="-r" falsevalue="" checked="False" label="Also produce a text report" />
  </inputs>
  <outputs>
    <data name="outplot" format="png"/>
    <data name="outreport" format="tabular"/>
  </outputs>

  <help>

  </help>

  <requirements>
    <requirement type="package" version="1.7.1">numpy</requirement>
  </requirements>

3:e9c34ef993d6

<tool id="hetbox" version="1.0" name="Minor variant boxplot">
  <description> from allele counts</description>
  <command interpreter="python">hetbox.py $input $outplot $outreport $report</command>
  <inputs>
    <param name="input" type="data" format="tabular" label="Input allele counts"/>
    <param name="report" type="boolean" truevalue="-r" falsevalue="" checked="False" label="Also produce a text report" />
  </inputs>
  <outputs>
    <data name="outplot" format="png"/>
    <data name="outreport" format="tabular"/>
  </outputs>

  <help>

.. class:: infomark

**What it does**

    This will create a boxplot from the output of the "Count alleles" tool, showing the number of minor alleles per sample and the distribution of their frequencies (MAF). It can also, optionally, produce a textual report with these numbers.

  </help>

  <requirements>
    <requirement type="package" version="1.7.1">numpy</requirement>
  </requirements>