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annotate mafft/test/sample.linsi @ 18:e4d75f9efb90 draft

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planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty
author nick
date Thu, 02 Feb 2017 18:44:31 -0500
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18
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1 > 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
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2 --------------------MNGTE-G---------------------DNFYVPFSNKTG
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3 --------------------------------LARSPYEYPQY-----------------
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4 -------YLAEPW---------KYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLN
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5 YILLNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLV
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6 VLAIERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLV-GWS-----RYIPE
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7 GMQCSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA
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8 ------------------------------------------------------------
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9 ------------------------------------------------------------
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10 ---------------------------------------STQKAEKEVTRMVVLMVIGFL
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11 VCWVPYASVAFYIFT---HQGS-DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMI
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12 TTLCC-----GKNPLGDDE--SGASTSK-TEVSSVS-TSPVSPA----------------
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13 ------------------------------------------------------------
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14 ------------------------
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15 > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
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16 --------------------MNGTE-G---------------------PNFYVPFSNITG
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17 --------------------------------VVRSPFEQPQY-----------------
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18 -------YLAEPW---------QFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLN
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19 YILLNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLV
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20 VLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLV-GWS-----RYIPE
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21 GMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA
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22 ------------------------------------------------------------
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23 ------------------------------------------------------------
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24 ---------------------------------------TTQKAEKEVTRMVIIMVIFFL
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25 ICWLPYASVAMYIFT---HQGS-NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCML
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26 TSLCC-----GKNPLGDDE--ASATASK-TETSQVA-PA---------------------
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27 ------------------------------------------------------------
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28 ------------------------
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29 > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
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30 --------------------MNGTE-G---------------------INFYVPMSNKTG
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31 --------------------------------VVRSPFEYPQY-----------------
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32 -------YLAEPW---------KYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLN
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33 YILVNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLV
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34 VLAIERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLF-GWS-----RYMPE
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35 GMQCSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA
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36 ------------------------------------------------------------
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37 ------------------------------------------------------------
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38 ---------------------------------------TTQKAEKEVTRMVILMVLGFM
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39 LAWTPYAVVAFWIFT---NKGA-DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMI
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40 TTICC-----GKNPFGDEDVSSTVSQSK-TEVSSVS-SSQVSPA----------------
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41 ------------------------------------------------------------
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42 ------------------------
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43 > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
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44 --------------------MNGTE-G---------------------KNFYVPMSNRTG
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45 --------------------------------LVRSPFEYPQY-----------------
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46 -------YLAEPW---------QFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLN
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47 FILVNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLV
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48 VLAIERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLF-GWS-----RYIPE
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49 GMQCSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA
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50 ------------------------------------------------------------
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51 ------------------------------------------------------------
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52 ---------------------------------------STQKAEREVTKMVILMVFGFL
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53 IAWTPYATVAAWIFF---NKGA-DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCML
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54 TTIFC-----GKNPLGDDE-SSTVSTSK-TEVSSVS-PA---------------------
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55 ------------------------------------------------------------
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56 ------------------------
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57 > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
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58 --------------------MNGTE-G---------------------NNFYVPLSNRTG
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59 --------------------------------LVRSPFEYPQY-----------------
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60 -------YLAEPW---------QFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLN
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61 FILVNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLV
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62 VLAIERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLV-GWS-----RYIPE
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63 GIQCSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA
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64 ------------------------------------------------------------
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65 ------------------------------------------------------------
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66 ---------------------------------------STQKAEREVTKMVILMVLGFL
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67 VAWTPYATVAAWIFF---NKGA-AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCML
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68 TTLFC-----GKNPLGDEE-SSTVSTSK-TEVSSVS-PA---------------------
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69 ------------------------------------------------------------
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70 ------------------------
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71 > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
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72 --------------------MKQVP-E-------------------FHEDFYIPIPLDIN
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73 ------------------------------NLSAYSPFLVPQD-----------------
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74 -------HLGNQG---------IFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLN
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75 YILVNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLA
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76 VVAFERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLF-GWS-----RYIPE
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77 GLQCSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA
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78 ------------------------------------------------------------
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79 ------------------------------------------------------------
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80 ---------------------------------------STQKAEREVTKMVVVMVLGFL
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81 VCWAPYASFSLWIVS---HRGE-EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM
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82 KMVC------GKN-IEEDE--ASTSSQV-TQVSSVA-PEK--------------------
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83 ------------------------------------------------------------
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84 ------------------------
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85 > 7== M13299 1 human BCP <>[Science232(4747),193-202'86]
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86 --------------------MRKMS-E---------------------EEFYL-----FK
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87 ------------------------------NISSVGPWDGPQY-----------------
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88 -------HIAPVW---------AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLN
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89 YILVNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLA
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90 FLAFERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFF-GWS-----RFIPE
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91 GLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA
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92 ------------------------------------------------------------
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93 ------------------------------------------------------------
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94 ---------------------------------------TTQKAEREVSRMVVVMVGSFC
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95 VCYVPYAAFAMYMVN---NRNH-GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM
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96 KMVC------GKA-MTDES--DTCSSQK-TEVSTVS-STQVGPN----------------
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97 ------------------------------------------------------------
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98 ------------------------
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99 > 8=opsin, greensensitive human (fragment) S07060
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100 ------------------------------------------------------------
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101 ------------------------------------------------------------
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102 ------------------------------------------------------------
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103 ---------DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLA
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104 IISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWPH
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105 GLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE
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106 ------------------------------------------------------------
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107 ------------------------------------------------------------
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108 ---------------------------------------STQKAEKEVTRMVVVMVLAFC
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109 ------------------------------------------------------------
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110 ------------------------------------------------------------
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111 ------------------------------------------------------------
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112 ------------------------
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113 > 9== K03494 1 human GCP <>[Science232(4747),193-202'86]
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114 MAQQWS-LQRLAGRHPQDSYEDSTQ-S---------------------SIFTYTNSN---
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115 --------------------------------STRGPFEGPNY-----------------
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116 -------HIAPRW---------VYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLN
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117 WILVNLAVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLA
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118 IISWERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWPH
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119 GLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE
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120 ------------------------------------------------------------
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121 ------------------------------------------------------------
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122 ---------------------------------------STQKAEKEVTRMVVVMVLAFC
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123 FCWGPYAFFACFAAA---NPGY-PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL
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124 QLF-------GKK-VDDGS--ELSSASK-TEVSSV---SSVSPA----------------
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125 ------------------------------------------------------------
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126 ------------------------
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127 > 10== Z68193 1 human Red Opsin <>[]
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128 MAQQWS-LQRLAGRHPQDSYEDSTQ-S---------------------SIFTYTNSN---
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129 --------------------------------STRGPFEGPNY-----------------
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130 -------HIAPRW---------VYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLN
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131 WILVNLAVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLA
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132 IISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIF-GWS-----RYWPH
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133 GLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE
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134 ------------------------------------------------------------
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135 ------------------------------------------------------------
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136 ---------------------------------------STQKAEKEVTRMVVVMIFAYC
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137 VCWGPYTFFACFAAA---NPGY-AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL
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138 QLF-------GKK-VDDGS--ELSSASK-TEVSSV---SSVSPA----------------
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139 ------------------------------------------------------------
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140 ------------------------
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141 > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
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142 MTEAWNVAVFAARRSRDD--DDTTR-G---------------------SVFTYTNTN---
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143 --------------------------------NTRGPFEGPNY-----------------
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144 -------HIAPRW---------VYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLN
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145 WILVNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLA
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146 IISWERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIF-GWS-----RYWPH
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147 GLKTSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE
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148 ------------------------------------------------------------
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149 ------------------------------------------------------------
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150 ---------------------------------------STQKAEREVSRMVVVMIVAFC
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151 ICWGPYASFVSFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM
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152 QLF-------GKK-VDDGS--EASTTSR-TEVSSVS-NSSVAPA----------------
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153 ------------------------------------------------------------
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154 ------------------------
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155 > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90]
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156 MA-AWE-AAFAARRRHEE--EDTTR-D---------------------SVFTYTNSN---
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157 --------------------------------NTRGPFEGPNY-----------------
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158 -------HIAPRW---------VYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLN
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159 WILVNLAVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLA
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160 IISWERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIF-GWS-----RYWPH
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161 GLKTSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE
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162 ------------------------------------------------------------
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163 ------------------------------------------------------------
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164 ---------------------------------------STQKAEKEVSRMVVVMIVAYC
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165 FCWGPYTFFACFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL
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166 QLF-------GKK-VDDGS--EVST-SR-TEVSSVS-NSSVSPA----------------
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167 ------------------------------------------------------------
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168 ------------------------
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169 > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95]
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170 ------------------------M-S---------------------SNSSQAPPN---
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171 --------------------------------GTPGPFDGPQW-----------------
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172 ------PYQAPQS---------TYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLN
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173 YILVNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLA
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174 ILALERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLL-GWS-----SYVPE
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175 GLRTSCGPNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD
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176 ------------------------------------------------------------
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177 ------------------------------------------------------------
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178 ---------------------------------------TTQRAEREVTRMVIVMVMAFL
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179 LCWLPYSTFALVVAT---HKGI-IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL
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180 EMLCCG--YQPQR-TGKAS--PGTPGPH-ADVTAAGLRNKVMPAHP----V---------
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181 ------------------------------------------------------------
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182 ------------------------
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183 > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
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184 --------------------MESGNVS---------------------SSLF--------
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185 --------------------------------GNVSTALRPEA--RLSA---ETRLLGWN
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186 VPPEELRHIPEHWLTYPEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSN
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187 ILVINLAFCDFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNA
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188 FIAYDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPE
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189 GYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQA
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190 KKMNVESL----------------------------------------------------
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191 ------------------------------------------------------------
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192 ---------------------------------RSNVDKNKETAEIRIAKAAITICFLFF
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193 CSWTPYGVMSLIGAF---GDKT-LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ
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194 KRCPWL--ALNEK-APESS--AVASTST-TQEPQQT---------------TAA------
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195 ------------------------------------------------------------
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196 ------------------------
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197 > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
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198 --------------------MEYHNVS---------------------SVL---------
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199 --------------------------------GNVSSVLRPDA--RLSA---ESRLLGWN
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200 VPPDELRHIPEHWLIYPEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSN
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201 ILVINLAFCDFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNA
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202 FIAYDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPE
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203 GYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQA
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204 KKMNVDSL----------------------------------------------------
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205 ------------------------------------------------------------
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206 ---------------------------------RSNVDKSKEAAEIRIAKAAITICFLFF
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207 ASWTPYGVMSLIGAF---GDKT-LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQ
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208 KRCPWL--AISEK-APESR--AAISTST-TQEQQQT---------------TAA------
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209 ------------------------------------------------------------
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210 ------------------------
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211 > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
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212 --------------------MEPLC-----------------------------------
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213 --------------------------------NASEPPLRPEA--R-SSGNGDLQFLGWN
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214 VPPDQIQYIPEHWLTQLEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSN
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215 MFVLNLAVFDLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNA
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216 AIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPE
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217 GYLTSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQA
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218 KKMNVESL----------------------------------------------------
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219 ------------------------------------------------------------
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220 ---------------------------------RSNVDKSKETAEIRIAKAAITICFLFF
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221 VSWTPYGVMSLIGAF---GDKS-LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQ
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222 KRCPWL--GVNEK-SGEIS--SAQSTTT-QEQQQTT---------------AA-------
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223 ------------------------------------------------------------
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224 ------------------------
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225 > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
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226 --------------------MDALC-----------------------------------
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227 --------------------------------NASEPPLRPEA--RMSSGSDELQFLGWN
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228 VPPDQIQYIPEHWLTQLEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSN
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229 MFVLNLAVFDLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNA
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230 AIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPE
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231 GYLTSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQA
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232 KKMNVESL----------------------------------------------------
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233 ------------------------------------------------------------
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234 ---------------------------------RSNVDKSKETAEIRIAKAAITICFLFF
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235 VSWTPYGVMSLIGAF---GDKS-LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQ
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236 KRCPWL--GVNEK-SGEAS--SAQSTTT-QEQTQQT---------------SAA------
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237 ------------------------------------------------------------
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238 ------------------------
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239 > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
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240 --------------------MTNAT-G---------------------PQMAY-----YG
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241 --------------------------------AASMDFGYPE---GVSIVD--------F
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242 VRPEIKPYVHQHWYNYPPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPAN
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243 ILVVNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLC
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244 MISFDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFF-GWG-----NYILE
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245 GILDSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQA
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246 KKMNVSTL----------------------------------------------------
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247 ------------------------------------------------------------
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248 ---------------------------------RS-NEADAQRAEIRIAKTALVNVSLWF
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249 ICWTPYALISLKGVM---GDTS-GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAIT
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250 QHLPWF--CVHET-ETKSN--DDSQSNS-TVAQDKA------------------------
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251 ------------------------------------------------------------
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252 ------------------------
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253 > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
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254 --------------------MANVT-G---------------------PQMAF-----YG
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255 --------------------------------SGAATFGYPE---GMTVAD--------F
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256 VPDRVKHMVLDHWYNYPPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPAN
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257 MLIVNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLC
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258 MISFDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFF-GWG-----SYTLE
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259 GILDSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQA
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260 KKMNVTNL----------------------------------------------------
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261 ------------------------------------------------------------
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262 ---------------------------------RS-NEAETQRAEIRIAKTALVNVSLWF
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263 ICWTPYAAITIQGLL---GNAE-GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAIT
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264 QHLPWF--CVHEK-DPNDV--EENQSSN-TQTQEKS------------------------
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265 ------------------------------------------------------------
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266 ------------------------
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267 > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85]
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268 MES--------------FAVAAAQL-G---------------------PHFA--------
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269 ----------------------------------PLS--------NGSVVD--------K
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270 VTPDMAHLISPYWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPAN
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271 LLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMC
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272 MISLDRYQVIVKGMAGR-PMTIPLALGKM---------------------------YVPE
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273 GNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQA
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274 KKMNVKSL----------------------------------------------------
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275 ------------------------------------------------------------
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276 ---------------------------------RS-SEDAEKSAEGKLAKVALVTITLWF
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277 MAWTPYLVINCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK
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278 EKCPCC--VFGKV-DDGKS--SDAQSQA-TASEAES------KA----------------
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279 ------------------------------------------------------------
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280 ------------------------
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281 > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85]
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282 MES--------------FAVAAAQL-G---------------------PHFA--------
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283 ----------------------------------PLS--------NGSVVD--------K
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284 VTPDMAHLISPYWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPAN
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285 LLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMC
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286 MISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAF-GWS-----RYVPE
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287 GNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQA
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288 KKMNVKSL----------------------------------------------------
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289 ------------------------------------------------------------
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290 ---------------------------------RS-SEDAEKSAEGKLAKVALVTITLWF
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291 MAWTPYLVINCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK
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292 EKCPCC--VFGKV-DDGKS--SDAQSQA-TASEAES------KA----------------
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293 ------------------------------------------------------------
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294 ------------------------
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295 > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
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296 MDS--------------FAAVATQL-G---------------------PQFA--------
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297 ----------------------------------APS--------NGSVVD--------K
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298 VTPDMAHLISPYWDQFPAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPAN
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299 LLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMC
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300 MISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVF-GWS-----RYVPE
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301 GNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQA
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302 KKMNVKSL----------------------------------------------------
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303 ------------------------------------------------------------
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304 ---------------------------------RS-SEDADKSAEGKLAKVALVTISLWF
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305 MAWTPYLVINCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK
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306 EKCPCC--VFGKV-DDGKS--SEAQSQA-TTSEAES------KA----------------
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307 ------------------------------------------------------------
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308 ------------------------
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309 > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86]
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310 MERSHL---------PETPFDLAHS-G---------------------PRFQ--------
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311 ----------------------------------AQSSG------NGSVLD--------N
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312 VLPDMAHLVNPYWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPAN
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313 LLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMC
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314 MIAFDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLI-GWS-----AYVPE
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315 GNLTACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQA
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316 KKMNVKSL----------------------------------------------------
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317 ------------------------------------------------------------
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318 ---------------------------------RS-SEDCDKSAEGKLAKVALTTISLWF
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319 MAWTPYLVICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLK
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320 EKCPMC--VFGNT-DEPKP--DAPASDTETTSEADS------KA----------------
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321 ------------------------------------------------------------
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322 ------------------------
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323 > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
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324 MERSLL---------PEPPLAMALL-G---------------------PRFE--------
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325 ----------------------------------AQTGG------NRSVLD--------N
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326 VLPDMAPLVNPHWSRFAPMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPAN
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327 LLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMC
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328 MIAFDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLI-GWS-----SYVPE
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329 GNLTACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQA
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330 KKMNVKSL----------------------------------------------------
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331 ------------------------------------------------------------
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332 ---------------------------------RS-SEDCDKSAENKLAKVALTTISLWF
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333 MAWTPYLIICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLK
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334 EKCPMC--VCGTT-DEPKP--DAPPSDTETTSEAES------KD----------------
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335 ------------------------------------------------------------
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336 ------------------------
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337 > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[]
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338 --------------------MIAVS-G---------------------PSYE--------
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339 ----------------------------------AFSYGGQARFNNQTVVD--------K
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340 VPPDMLHLIDANWYQYPPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSN
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341 LFVINLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMT
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342 MIAFDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMF-GWN-----RYVPE
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343 GNMTACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQA
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344 KKMNVASL----------------------------------------------------
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345 ------------------------------------------------------------
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346 ---------------------------------RS-SENQNTSAECKLAKVALMTISLWF
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347 MAWTPYLVINFSGIF---NL-V-KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALF
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348 AKFPSL--AC-AA-EPSSD--AVSTTSG-TTTVTDN------EKS------NA-------
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349 ------------------------------------------------------------
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350 ------------------------
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351 > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
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352 ----------------------MAN-Q---------------------LSYS--------
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353 ----------------------------------SLGWPYQP---NASVVD--------T
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354 MPKEMLYMIHEHWYAFPPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTN
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355 LLVVNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMV
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356 MITLDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFF-GWS-----RYVPE
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357 GNLTSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQA
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358 KKMNVASL----------------------------------------------------
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359 ------------------------------------------------------------
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360 ---------------------------------RANADQQKQSAECRLAKVAMMTVGLWF
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361 MAWTPYLIISWAGVF---SSGT-RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALY
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362 QRFPSL--ACGSG-ESGSD--VKSEASA-TTTMEEK------PKI------PEA------
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363 ------------------------------------------------------------
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364 ------------------------
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365 > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
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366 ----------------------MVE-S---------------------TTLV--------
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367 ----------------------------------NQTWWY-----NPTV-----------
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368 -------DIHPHWAKFDPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPAN
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369 MFIINLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMA
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370 MISIDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVF-NWG-----AYVPE
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371 GILTSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMA
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372 KRLNAKEL----------------------------------------------------
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373 ------------------------------------------------------------
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374 ---------------------------------RK-AQ-AGASAEMKLAKISMVIITQFM
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375 LSWSPYAIIALLAQF---GPAE-WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQ
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376 TTFPWLLTCCQFD-EKECE--DANDAEE-EVVASER----GGESR------DAAQMKEMM
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377 AMMQKMQAQQAAYQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQ
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378 GAPPQVEAPQGAPPQGVDNQAYQA
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379 > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
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380 -----------------------MG-R---------------------DLRD--------
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381 ----------------------------------NETWWY-----NPSI-----------
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382 -------VVHPHWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPAN
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383 MFIINLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMA
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384 MISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIF-GWG-----AYTLE
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385 GVLCNCSFDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMA
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386 KRLNAKEL----------------------------------------------------
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387 ------------------------------------------------------------
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388 ---------------------------------RK-AQ-AGANAEMRLAKISIVIVSQFL
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389 LSWSPYAVVALLAQF---GPLE-WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAIS
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390 QTFPWVLTCCQFD-DKETE--DDKDAET-EIPAGES--SDAAPSA------DAAQMKEMM
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391 AMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQ
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392 GAPP------AAPPQGVDNQAYQA
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393 > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
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394 M-------------------MDVNSSGRPDLY----GHLRSFL--LPEVGRGLPDLSPDG
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395 ------------GADPVAGSWAPHLLS---EVTASPA---PTW----------------D
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396 APPDNASGCGEQI----NYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSN
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397 YLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLC
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398 VISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVND
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399 DKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG
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400 --------------FPRVEPDSVIALNG--------------------------------
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401 ------------------------------IVKLQKE-------------------VEEC
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402 AN------------------LSRLLKH------ER-KNISIFKREQKAATTLGIIVGAFT
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403 VCWLPFFLLSTARPFICGTSCS-CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYR
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404 SLLQCQ--YRNIN-RKLSA----AGMHE-ALKLAER------PERPEFVLQNADYCRK--
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405 ------------------------------------------------------------
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406 -------------------KGHDS
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407 > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
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408 ------------------------------------------------------------
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409 ---------------------MPHLLSGFLEVTASPA---PTW----------------D
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410 APPDNVSGCGEQI----NYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSN
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411 YLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLC
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412 VISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVND
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413 DKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG
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414 --------------FPRVQPESVISLNG--------------------------------
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415 ------------------------------VVKLQKE-------------------VEEC
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416 AN------------------LSRLLKH------ER-KNISIFKREQKAATTLGIIVGAFT
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417 VCWLPFFLLSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSR
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418 SLLQCQ--YRNIN-RKLSA----AGMHE-ALKLAER------PERSEFVLQNSDHCGK--
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419 ------------------------------------------------------------
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420 -------------------KGHDT
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421 > 31=p A47425 serotonin receptor 5HT-7 - rat
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422 ------------------------------------------------------------
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423 ---------------------MPHLLSGFLEVTASPA---PTW----------------D
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424 APPDNVSGCGEQI----NYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSN
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425 YLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLC
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426 VISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVND
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427 DKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG
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428 --------------FPRVQPESVISLNG--------------------------------
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429 ------------------------------VVKLQKE-------------------VEEC
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430 AN------------------LSRLLKH------ER-KNISIFKREQKAATTLGIIVGAFT
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431 VCWLPFFLLSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYR
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432 SLLQCQ--YRNIN-RKLSA----AGMHE-ALKLAER------PERSEFVLQNSDHCGK--
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433 ------------------------------------------------------------
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434 -------------------KGHDT
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435 > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92]
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436 --------------------MDVLSPG-------------------------------QG
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437 --------------------------N---NTTSPPA---PFE-----------------
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438 -TGGNTTGIS-------DVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVAN
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439 YLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLC
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440 AIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTP---EDRSD
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441 PDACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKV
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442 EKTGADTRHGASPAPQPKK-----SVNGE--SGSRNWRLGVESKAGGALCA---------
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443 ------NGAVRQGD---------------------------------DGAALEVIEVHRV
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444 GNSKEHLPLPSEAG--PTPCAPASFERKNERNAEA-KRKMALARERKTVKTLGIIMGTFI
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445 LCWLPFFIVALVLPF---CESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK
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446 KIIKCK--FCRQ------------------------------------------------
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447 ------------------------------------------------------------
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448 ------------------------
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449 > 33=p A35181 serotonin receptor class 1A - rat
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450 --------------------MDVFSFG-------------------------------QG
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451 --------------------------N---NTTASQE---PFG-----------------
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452 -TGGNVTSIS-------DVTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVAN
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453 YLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLC
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454 AIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTP---EDRSD
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455 PDACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKV
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456 EKKGAGTSLGTSSAPPPKK-----SLNGQ--PGSGDWRRCAENRAVGTPCT---------
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457 ------NGAVRQGD---------------------------------DEATLEVIEVHRV
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458 GNSKEHLPLPSESG--SNSYAPACLERKNERNAEA-KRKMALARERKTVKTLGIIMGTFI
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459 LCWLPFFIVALVLPF---CESSCHMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK
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460 KIIKCK--FCRR------------------------------------------------
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461 ------------------------------------------------------------
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462 ------------------------
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463 > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
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464 --------------------MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG
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465 LVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM----------
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466 -TDDRYWSLT-------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVAN
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467 YLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLV
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468 AIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDP--NNDPDK
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469 TGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQM
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470 TKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNR
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471 AKKLPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQC
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472 NNGKK-------------------ISSNDTPYSRT-REKLELKRERKAARTLAIITGAFL
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473 ICWLPFFIIALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ
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474 KILFGK--YRRGH-----------------------------------------------
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475 ------------------------------------------------------------
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476 -------------------R----
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477 > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
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478 --------------------MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG
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479 LVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM----------
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480 -TDDRYWSLT-------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVAN
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481 YLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLV
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482 AIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDP--NNDPDK
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483 TGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQM
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484 TKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNR
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485 AKKLPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQC
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486 NNGKK-------------------ISSNDTPYSRT-REKLELKRERKAARTLAIITGAFL
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487 ICWLPFFIIALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ
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488 KILFGK--YRRGH-----------------------------------------------
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489 ------------------------------------------------------------
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490 -------------------R----
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491 > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
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492 --------------------MEGAE-GQEELD-------------WEALYLRLP------
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493 -------------------------LQ---NCSWNSTGWEPNW--NVTVV----------
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494 -PNTTWWQASAPFDT--PAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAAN
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495 NLILSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLV
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496 AIALDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLL-GWKDPDWNQRVSE
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497 DLRCVVSQDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGAT
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498 ARGGVG--------PPPV------------------------------------------
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499 ----PAGGALVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPE---KQSC
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500 ANGLEADPPTTGYGAVAAAYYPSLVRR------KP-KEAADSKRERKAAKTLAIITGAFV
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501 ACWLPFFVLAILVPT---CDCE--VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQ
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502 RLLCGR--RVRRR-----------------------------------------------
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503 ------------------------------------------------------------
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504 -------------------RAPQ-