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diff mafft/test/sample.linsi @ 18:e4d75f9efb90 draft
planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty
| author | nick |
|---|---|
| date | Thu, 02 Feb 2017 18:44:31 -0500 |
| parents | |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mafft/test/sample.linsi Thu Feb 02 18:44:31 2017 -0500 @@ -0,0 +1,504 @@ +> 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] +--------------------MNGTE-G---------------------DNFYVPFSNKTG +--------------------------------LARSPYEYPQY----------------- +-------YLAEPW---------KYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLN +YILLNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLV +VLAIERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLV-GWS-----RYIPE +GMQCSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------STQKAEKEVTRMVVLMVIGFL +VCWVPYASVAFYIFT---HQGS-DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMI +TTLCC-----GKNPLGDDE--SGASTSK-TEVSSVS-TSPVSPA---------------- +------------------------------------------------------------ +------------------------ +> 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] +--------------------MNGTE-G---------------------PNFYVPFSNITG +--------------------------------VVRSPFEQPQY----------------- +-------YLAEPW---------QFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLN +YILLNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLV +VLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLV-GWS-----RYIPE +GMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------TTQKAEKEVTRMVIIMVIFFL +ICWLPYASVAMYIFT---HQGS-NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCML +TSLCC-----GKNPLGDDE--ASATASK-TETSQVA-PA--------------------- +------------------------------------------------------------ +------------------------ +> 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 +--------------------MNGTE-G---------------------INFYVPMSNKTG +--------------------------------VVRSPFEYPQY----------------- +-------YLAEPW---------KYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLN +YILVNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLV +VLAIERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLF-GWS-----RYMPE +GMQCSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------TTQKAEKEVTRMVILMVLGFM +LAWTPYAVVAFWIFT---NKGA-DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMI +TTICC-----GKNPFGDEDVSSTVSQSK-TEVSSVS-SSQVSPA---------------- +------------------------------------------------------------ +------------------------ +> 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish +--------------------MNGTE-G---------------------KNFYVPMSNRTG +--------------------------------LVRSPFEYPQY----------------- +-------YLAEPW---------QFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLN +FILVNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLV +VLAIERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLF-GWS-----RYIPE +GMQCSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------STQKAEREVTKMVILMVFGFL +IAWTPYATVAAWIFF---NKGA-DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCML +TTIFC-----GKNPLGDDE-SSTVSTSK-TEVSSVS-PA--------------------- +------------------------------------------------------------ +------------------------ +> 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish +--------------------MNGTE-G---------------------NNFYVPLSNRTG +--------------------------------LVRSPFEYPQY----------------- +-------YLAEPW---------QFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLN +FILVNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLV +VLAIERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLV-GWS-----RYIPE +GIQCSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------STQKAEREVTKMVILMVLGFL +VAWTPYATVAAWIFF---NKGA-AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCML +TTLFC-----GKNPLGDEE-SSTVSTSK-TEVSSVS-PA--------------------- +------------------------------------------------------------ +------------------------ +> 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- +--------------------MKQVP-E-------------------FHEDFYIPIPLDIN +------------------------------NLSAYSPFLVPQD----------------- +-------HLGNQG---------IFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLN +YILVNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLA +VVAFERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLF-GWS-----RYIPE +GLQCSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------STQKAEREVTKMVVVMVLGFL +VCWAPYASFSLWIVS---HRGE-EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM +KMVC------GKN-IEEDE--ASTSSQV-TQVSSVA-PEK-------------------- +------------------------------------------------------------ +------------------------ +> 7== M13299 1 human BCP <>[Science232(4747),193-202'86] +--------------------MRKMS-E---------------------EEFYL-----FK +------------------------------NISSVGPWDGPQY----------------- +-------HIAPVW---------AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLN +YILVNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLA +FLAFERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFF-GWS-----RFIPE +GLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------TTQKAEREVSRMVVVMVGSFC +VCYVPYAAFAMYMVN---NRNH-GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM +KMVC------GKA-MTDES--DTCSSQK-TEVSTVS-STQVGPN---------------- +------------------------------------------------------------ +------------------------ +> 8=opsin, greensensitive human (fragment) S07060 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +---------DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLA +IISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWPH +GLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------STQKAEKEVTRMVVVMVLAFC +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------ +> 9== K03494 1 human GCP <>[Science232(4747),193-202'86] +MAQQWS-LQRLAGRHPQDSYEDSTQ-S---------------------SIFTYTNSN--- +--------------------------------STRGPFEGPNY----------------- +-------HIAPRW---------VYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLN +WILVNLAVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLA +IISWERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWPH +GLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------STQKAEKEVTRMVVVMVLAFC +FCWGPYAFFACFAAA---NPGY-PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL +QLF-------GKK-VDDGS--ELSSASK-TEVSSV---SSVSPA---------------- +------------------------------------------------------------ +------------------------ +> 10== Z68193 1 human Red Opsin <>[] +MAQQWS-LQRLAGRHPQDSYEDSTQ-S---------------------SIFTYTNSN--- +--------------------------------STRGPFEGPNY----------------- +-------HIAPRW---------VYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLN +WILVNLAVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLA +IISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIF-GWS-----RYWPH +GLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------STQKAEKEVTRMVVVMIFAYC +VCWGPYTFFACFAAA---NPGY-AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL +QLF-------GKK-VDDGS--ELSSASK-TEVSSV---SSVSPA---------------- +------------------------------------------------------------ +------------------------ +> 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] +MTEAWNVAVFAARRSRDD--DDTTR-G---------------------SVFTYTNTN--- +--------------------------------NTRGPFEGPNY----------------- +-------HIAPRW---------VYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLN +WILVNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLA +IISWERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIF-GWS-----RYWPH +GLKTSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------STQKAEREVSRMVVVMIVAFC +ICWGPYASFVSFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM +QLF-------GKK-VDDGS--EASTTSR-TEVSSVS-NSSVAPA---------------- +------------------------------------------------------------ +------------------------ +> 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] +MA-AWE-AAFAARRRHEE--EDTTR-D---------------------SVFTYTNSN--- +--------------------------------NTRGPFEGPNY----------------- +-------HIAPRW---------VYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLN +WILVNLAVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLA +IISWERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIF-GWS-----RYWPH +GLKTSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------STQKAEKEVSRMVVVMIVAYC +FCWGPYTFFACFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL +QLF-------GKK-VDDGS--EVST-SR-TEVSSVS-NSSVSPA---------------- +------------------------------------------------------------ +------------------------ +> 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] +------------------------M-S---------------------SNSSQAPPN--- +--------------------------------GTPGPFDGPQW----------------- +------PYQAPQS---------TYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLN +YILVNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLA +ILALERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLL-GWS-----SYVPE +GLRTSCGPNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------TTQRAEREVTRMVIVMVMAFL +LCWLPYSTFALVVAT---HKGI-IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL +EMLCCG--YQPQR-TGKAS--PGTPGPH-ADVTAAGLRNKVMPAHP----V--------- +------------------------------------------------------------ +------------------------ +> 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] +--------------------MESGNVS---------------------SSLF-------- +--------------------------------GNVSTALRPEA--RLSA---ETRLLGWN +VPPEELRHIPEHWLTYPEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSN +ILVINLAFCDFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNA +FIAYDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPE +GYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQA +KKMNVESL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RSNVDKNKETAEIRIAKAAITICFLFF +CSWTPYGVMSLIGAF---GDKT-LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ +KRCPWL--ALNEK-APESS--AVASTST-TQEPQQT---------------TAA------ +------------------------------------------------------------ +------------------------ +> 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 +--------------------MEYHNVS---------------------SVL--------- +--------------------------------GNVSSVLRPDA--RLSA---ESRLLGWN +VPPDELRHIPEHWLIYPEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSN +ILVINLAFCDFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNA +FIAYDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPE +GYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQA +KKMNVDSL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RSNVDKSKEAAEIRIAKAAITICFLFF +ASWTPYGVMSLIGAF---GDKT-LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQ +KRCPWL--AISEK-APESR--AAISTST-TQEQQQT---------------TAA------ +------------------------------------------------------------ +------------------------ +> 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] +--------------------MEPLC----------------------------------- +--------------------------------NASEPPLRPEA--R-SSGNGDLQFLGWN +VPPDQIQYIPEHWLTQLEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSN +MFVLNLAVFDLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNA +AIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPE +GYLTSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQA +KKMNVESL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RSNVDKSKETAEIRIAKAAITICFLFF +VSWTPYGVMSLIGAF---GDKS-LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQ +KRCPWL--GVNEK-SGEIS--SAQSTTT-QEQQQTT---------------AA------- +------------------------------------------------------------ +------------------------ +> 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 +--------------------MDALC----------------------------------- +--------------------------------NASEPPLRPEA--RMSSGSDELQFLGWN +VPPDQIQYIPEHWLTQLEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSN +MFVLNLAVFDLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNA +AIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPE +GYLTSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQA +KKMNVESL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RSNVDKSKETAEIRIAKAAITICFLFF +VSWTPYGVMSLIGAF---GDKS-LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQ +KRCPWL--GVNEK-SGEAS--SAQSTTT-QEQTQQT---------------SAA------ +------------------------------------------------------------ +------------------------ +> 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 +--------------------MTNAT-G---------------------PQMAY-----YG +--------------------------------AASMDFGYPE---GVSIVD--------F +VRPEIKPYVHQHWYNYPPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPAN +ILVVNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLC +MISFDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFF-GWG-----NYILE +GILDSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQA +KKMNVSTL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RS-NEADAQRAEIRIAKTALVNVSLWF +ICWTPYALISLKGVM---GDTS-GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAIT +QHLPWF--CVHET-ETKSN--DDSQSNS-TVAQDKA------------------------ +------------------------------------------------------------ +------------------------ +> 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 +--------------------MANVT-G---------------------PQMAF-----YG +--------------------------------SGAATFGYPE---GMTVAD--------F +VPDRVKHMVLDHWYNYPPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPAN +MLIVNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLC +MISFDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFF-GWG-----SYTLE +GILDSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQA +KKMNVTNL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RS-NEAETQRAEIRIAKTALVNVSLWF +ICWTPYAAITIQGLL---GNAE-GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAIT +QHLPWF--CVHEK-DPNDV--EENQSSN-TQTQEKS------------------------ +------------------------------------------------------------ +------------------------ +> 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] +MES--------------FAVAAAQL-G---------------------PHFA-------- +----------------------------------PLS--------NGSVVD--------K +VTPDMAHLISPYWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPAN +LLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMC +MISLDRYQVIVKGMAGR-PMTIPLALGKM---------------------------YVPE +GNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQA +KKMNVKSL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RS-SEDAEKSAEGKLAKVALVTITLWF +MAWTPYLVINCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK +EKCPCC--VFGKV-DDGKS--SDAQSQA-TASEAES------KA---------------- +------------------------------------------------------------ +------------------------ +> 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] +MES--------------FAVAAAQL-G---------------------PHFA-------- +----------------------------------PLS--------NGSVVD--------K +VTPDMAHLISPYWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPAN +LLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMC +MISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAF-GWS-----RYVPE +GNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQA +KKMNVKSL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RS-SEDAEKSAEGKLAKVALVTITLWF +MAWTPYLVINCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK +EKCPCC--VFGKV-DDGKS--SDAQSQA-TASEAES------KA---------------- +------------------------------------------------------------ +------------------------ +> 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' +MDS--------------FAAVATQL-G---------------------PQFA-------- +----------------------------------APS--------NGSVVD--------K +VTPDMAHLISPYWDQFPAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPAN +LLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMC +MISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVF-GWS-----RYVPE +GNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQA +KKMNVKSL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RS-SEDADKSAEGKLAKVALVTISLWF +MAWTPYLVINCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK +EKCPCC--VFGKV-DDGKS--SEAQSQA-TTSEAES------KA---------------- +------------------------------------------------------------ +------------------------ +> 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] +MERSHL---------PETPFDLAHS-G---------------------PRFQ-------- +----------------------------------AQSSG------NGSVLD--------N +VLPDMAHLVNPYWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPAN +LLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMC +MIAFDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLI-GWS-----AYVPE +GNLTACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQA +KKMNVKSL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RS-SEDCDKSAEGKLAKVALTTISLWF +MAWTPYLVICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLK +EKCPMC--VFGNT-DEPKP--DAPASDTETTSEADS------KA---------------- +------------------------------------------------------------ +------------------------ +> 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 +MERSLL---------PEPPLAMALL-G---------------------PRFE-------- +----------------------------------AQTGG------NRSVLD--------N +VLPDMAPLVNPHWSRFAPMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPAN +LLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMC +MIAFDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLI-GWS-----SYVPE +GNLTACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQA +KKMNVKSL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RS-SEDCDKSAENKLAKVALTTISLWF +MAWTPYLIICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLK +EKCPMC--VCGTT-DEPKP--DAPPSDTETTSEAES------KD---------------- +------------------------------------------------------------ +------------------------ +> 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] +--------------------MIAVS-G---------------------PSYE-------- +----------------------------------AFSYGGQARFNNQTVVD--------K +VPPDMLHLIDANWYQYPPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSN +LFVINLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMT +MIAFDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMF-GWN-----RYVPE +GNMTACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQA +KKMNVASL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RS-SENQNTSAECKLAKVALMTISLWF +MAWTPYLVINFSGIF---NL-V-KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALF +AKFPSL--AC-AA-EPSSD--AVSTTSG-TTTVTDN------EKS------NA------- +------------------------------------------------------------ +------------------------ +> 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] +----------------------MAN-Q---------------------LSYS-------- +----------------------------------SLGWPYQP---NASVVD--------T +MPKEMLYMIHEHWYAFPPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTN +LLVVNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMV +MITLDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFF-GWS-----RYVPE +GNLTSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQA +KKMNVASL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RANADQQKQSAECRLAKVAMMTVGLWF +MAWTPYLIISWAGVF---SSGT-RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALY +QRFPSL--ACGSG-ESGSD--VKSEASA-TTTMEEK------PKI------PEA------ +------------------------------------------------------------ +------------------------ +> 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] +----------------------MVE-S---------------------TTLV-------- +----------------------------------NQTWWY-----NPTV----------- +-------DIHPHWAKFDPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPAN +MFIINLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMA +MISIDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVF-NWG-----AYVPE +GILTSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMA +KRLNAKEL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RK-AQ-AGASAEMKLAKISMVIITQFM +LSWSPYAIIALLAQF---GPAE-WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQ +TTFPWLLTCCQFD-EKECE--DANDAEE-EVVASER----GGESR------DAAQMKEMM +AMMQKMQAQQAAYQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQ +GAPPQVEAPQGAPPQGVDNQAYQA +> 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] +-----------------------MG-R---------------------DLRD-------- +----------------------------------NETWWY-----NPSI----------- +-------VVHPHWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPAN +MFIINLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMA +MISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIF-GWG-----AYTLE +GVLCNCSFDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMA +KRLNAKEL---------------------------------------------------- +------------------------------------------------------------ +---------------------------------RK-AQ-AGANAEMRLAKISIVIVSQFL +LSWSPYAVVALLAQF---GPLE-WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAIS +QTFPWVLTCCQFD-DKETE--DDKDAET-EIPAGES--SDAAPSA------DAAQMKEMM +AMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQ +GAPP------AAPPQGVDNQAYQA +> 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra +M-------------------MDVNSSGRPDLY----GHLRSFL--LPEVGRGLPDLSPDG +------------GADPVAGSWAPHLLS---EVTASPA---PTW----------------D +APPDNASGCGEQI----NYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSN +YLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLC +VISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVND +DKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG +--------------FPRVEPDSVIALNG-------------------------------- +------------------------------IVKLQKE-------------------VEEC +AN------------------LSRLLKH------ER-KNISIFKREQKAATTLGIIVGAFT +VCWLPFFLLSTARPFICGTSCS-CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYR +SLLQCQ--YRNIN-RKLSA----AGMHE-ALKLAER------PERPEFVLQNADYCRK-- +------------------------------------------------------------ +-------------------KGHDS +> 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] +------------------------------------------------------------ +---------------------MPHLLSGFLEVTASPA---PTW----------------D +APPDNVSGCGEQI----NYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSN +YLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLC +VISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVND +DKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG +--------------FPRVQPESVISLNG-------------------------------- +------------------------------VVKLQKE-------------------VEEC +AN------------------LSRLLKH------ER-KNISIFKREQKAATTLGIIVGAFT +VCWLPFFLLSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSR +SLLQCQ--YRNIN-RKLSA----AGMHE-ALKLAER------PERSEFVLQNSDHCGK-- +------------------------------------------------------------ +-------------------KGHDT +> 31=p A47425 serotonin receptor 5HT-7 - rat +------------------------------------------------------------ +---------------------MPHLLSGFLEVTASPA---PTW----------------D +APPDNVSGCGEQI----NYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSN +YLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLC +VISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVND +DKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG +--------------FPRVQPESVISLNG-------------------------------- +------------------------------VVKLQKE-------------------VEEC +AN------------------LSRLLKH------ER-KNISIFKREQKAATTLGIIVGAFT +VCWLPFFLLSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYR +SLLQCQ--YRNIN-RKLSA----AGMHE-ALKLAER------PERSEFVLQNSDHCGK-- +------------------------------------------------------------ +-------------------KGHDT +> 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] +--------------------MDVLSPG-------------------------------QG +--------------------------N---NTTSPPA---PFE----------------- +-TGGNTTGIS-------DVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVAN +YLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLC +AIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTP---EDRSD +PDACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKV +EKTGADTRHGASPAPQPKK-----SVNGE--SGSRNWRLGVESKAGGALCA--------- +------NGAVRQGD---------------------------------DGAALEVIEVHRV +GNSKEHLPLPSEAG--PTPCAPASFERKNERNAEA-KRKMALARERKTVKTLGIIMGTFI +LCWLPFFIVALVLPF---CESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK +KIIKCK--FCRQ------------------------------------------------ +------------------------------------------------------------ +------------------------ +> 33=p A35181 serotonin receptor class 1A - rat +--------------------MDVFSFG-------------------------------QG +--------------------------N---NTTASQE---PFG----------------- +-TGGNVTSIS-------DVTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVAN +YLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLC +AIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTP---EDRSD +PDACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKV +EKKGAGTSLGTSSAPPPKK-----SLNGQ--PGSGDWRRCAENRAVGTPCT--------- +------NGAVRQGD---------------------------------DEATLEVIEVHRV +GNSKEHLPLPSESG--SNSYAPACLERKNERNAEA-KRKMALARERKTVKTLGIIMGTFI +LCWLPFFIVALVLPF---CESSCHMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK +KIIKCK--FCRR------------------------------------------------ +------------------------------------------------------------ +------------------------ +> 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] +--------------------MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG +LVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---------- +-TDDRYWSLT-------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVAN +YLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLV +AIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDP--NNDPDK +TGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQM +TKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNR +AKKLPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQC +NNGKK-------------------ISSNDTPYSRT-REKLELKRERKAARTLAIITGAFL +ICWLPFFIIALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ +KILFGK--YRRGH----------------------------------------------- +------------------------------------------------------------ +-------------------R---- +> 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail +--------------------MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG +LVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---------- +-TDDRYWSLT-------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVAN +YLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLV +AIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDP--NNDPDK +TGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQM +TKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNR +AKKLPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQC +NNGKK-------------------ISSNDTPYSRT-REKLELKRERKAARTLAIITGAFL +ICWLPFFIIALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ +KILFGK--YRRGH----------------------------------------------- +------------------------------------------------------------ +-------------------R---- +> 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi +--------------------MEGAE-GQEELD-------------WEALYLRLP------ +-------------------------LQ---NCSWNSTGWEPNW--NVTVV---------- +-PNTTWWQASAPFDT--PAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAAN +NLILSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLV +AIALDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLL-GWKDPDWNQRVSE +DLRCVVSQDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGAT +ARGGVG--------PPPV------------------------------------------ +----PAGGALVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPE---KQSC +ANGLEADPPTTGYGAVAAAYYPSLVRR------KP-KEAADSKRERKAAKTLAIITGAFV +ACWLPFFVLAILVPT---CDCE--VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQ +RLLCGR--RVRRR----------------------------------------------- +------------------------------------------------------------ +-------------------RAPQ-