Mercurial > repos > nick > duplex
view mafft/test/sample.linsi @ 18:e4d75f9efb90 draft
planemo upload commit b'4303231da9e48b2719b4429a29b72421d24310f4\n'-dirty
| author | nick |
|---|---|
| date | Thu, 02 Feb 2017 18:44:31 -0500 |
| parents | |
| children |
line wrap: on
line source
> 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] --------------------MNGTE-G---------------------DNFYVPFSNKTG --------------------------------LARSPYEYPQY----------------- -------YLAEPW---------KYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLN YILLNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLV VLAIERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLV-GWS-----RYIPE GMQCSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------STQKAEKEVTRMVVLMVIGFL VCWVPYASVAFYIFT---HQGS-DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMI TTLCC-----GKNPLGDDE--SGASTSK-TEVSSVS-TSPVSPA---------------- ------------------------------------------------------------ ------------------------ > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] --------------------MNGTE-G---------------------PNFYVPFSNITG --------------------------------VVRSPFEQPQY----------------- -------YLAEPW---------QFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLN YILLNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLV VLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLV-GWS-----RYIPE GMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------TTQKAEKEVTRMVIIMVIFFL ICWLPYASVAMYIFT---HQGS-NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCML TSLCC-----GKNPLGDDE--ASATASK-TETSQVA-PA--------------------- ------------------------------------------------------------ ------------------------ > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 --------------------MNGTE-G---------------------INFYVPMSNKTG --------------------------------VVRSPFEYPQY----------------- -------YLAEPW---------KYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLN YILVNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLV VLAIERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLF-GWS-----RYMPE GMQCSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------TTQKAEKEVTRMVILMVLGFM LAWTPYAVVAFWIFT---NKGA-DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMI TTICC-----GKNPFGDEDVSSTVSQSK-TEVSSVS-SSQVSPA---------------- ------------------------------------------------------------ ------------------------ > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish --------------------MNGTE-G---------------------KNFYVPMSNRTG --------------------------------LVRSPFEYPQY----------------- -------YLAEPW---------QFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLN FILVNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLV VLAIERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLF-GWS-----RYIPE GMQCSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------STQKAEREVTKMVILMVFGFL IAWTPYATVAAWIFF---NKGA-DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCML TTIFC-----GKNPLGDDE-SSTVSTSK-TEVSSVS-PA--------------------- ------------------------------------------------------------ ------------------------ > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish --------------------MNGTE-G---------------------NNFYVPLSNRTG --------------------------------LVRSPFEYPQY----------------- -------YLAEPW---------QFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLN FILVNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLV VLAIERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLV-GWS-----RYIPE GIQCSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------STQKAEREVTKMVILMVLGFL VAWTPYATVAAWIFF---NKGA-AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCML TTLFC-----GKNPLGDEE-SSTVSTSK-TEVSSVS-PA--------------------- ------------------------------------------------------------ ------------------------ > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- --------------------MKQVP-E-------------------FHEDFYIPIPLDIN ------------------------------NLSAYSPFLVPQD----------------- -------HLGNQG---------IFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLN YILVNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLA VVAFERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLF-GWS-----RYIPE GLQCSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------STQKAEREVTKMVVVMVLGFL VCWAPYASFSLWIVS---HRGE-EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM KMVC------GKN-IEEDE--ASTSSQV-TQVSSVA-PEK-------------------- ------------------------------------------------------------ ------------------------ > 7== M13299 1 human BCP <>[Science232(4747),193-202'86] --------------------MRKMS-E---------------------EEFYL-----FK ------------------------------NISSVGPWDGPQY----------------- -------HIAPVW---------AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLN YILVNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLA FLAFERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFF-GWS-----RFIPE GLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------TTQKAEREVSRMVVVMVGSFC VCYVPYAAFAMYMVN---NRNH-GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM KMVC------GKA-MTDES--DTCSSQK-TEVSTVS-STQVGPN---------------- ------------------------------------------------------------ ------------------------ > 8=opsin, greensensitive human (fragment) S07060 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLA IISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWPH GLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------STQKAEKEVTRMVVVMVLAFC ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------ > 9== K03494 1 human GCP <>[Science232(4747),193-202'86] MAQQWS-LQRLAGRHPQDSYEDSTQ-S---------------------SIFTYTNSN--- --------------------------------STRGPFEGPNY----------------- -------HIAPRW---------VYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLN WILVNLAVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLA IISWERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIF-GWS-----RYWPH GLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------STQKAEKEVTRMVVVMVLAFC FCWGPYAFFACFAAA---NPGY-PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL QLF-------GKK-VDDGS--ELSSASK-TEVSSV---SSVSPA---------------- ------------------------------------------------------------ ------------------------ > 10== Z68193 1 human Red Opsin <>[] MAQQWS-LQRLAGRHPQDSYEDSTQ-S---------------------SIFTYTNSN--- --------------------------------STRGPFEGPNY----------------- -------HIAPRW---------VYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLN WILVNLAVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLA IISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIF-GWS-----RYWPH GLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------STQKAEKEVTRMVVVMIFAYC VCWGPYTFFACFAAA---NPGY-AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL QLF-------GKK-VDDGS--ELSSASK-TEVSSV---SSVSPA---------------- ------------------------------------------------------------ ------------------------ > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] MTEAWNVAVFAARRSRDD--DDTTR-G---------------------SVFTYTNTN--- --------------------------------NTRGPFEGPNY----------------- -------HIAPRW---------VYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLN WILVNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLA IISWERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIF-GWS-----RYWPH GLKTSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------STQKAEREVSRMVVVMIVAFC ICWGPYASFVSFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM QLF-------GKK-VDDGS--EASTTSR-TEVSSVS-NSSVAPA---------------- ------------------------------------------------------------ ------------------------ > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] MA-AWE-AAFAARRRHEE--EDTTR-D---------------------SVFTYTNSN--- --------------------------------NTRGPFEGPNY----------------- -------HIAPRW---------VYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLN WILVNLAVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLA IISWERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIF-GWS-----RYWPH GLKTSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------STQKAEKEVSRMVVVMIVAYC FCWGPYTFFACFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL QLF-------GKK-VDDGS--EVST-SR-TEVSSVS-NSSVSPA---------------- ------------------------------------------------------------ ------------------------ > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] ------------------------M-S---------------------SNSSQAPPN--- --------------------------------GTPGPFDGPQW----------------- ------PYQAPQS---------TYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLN YILVNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLA ILALERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLL-GWS-----SYVPE GLRTSCGPNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------TTQRAEREVTRMVIVMVMAFL LCWLPYSTFALVVAT---HKGI-IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL EMLCCG--YQPQR-TGKAS--PGTPGPH-ADVTAAGLRNKVMPAHP----V--------- ------------------------------------------------------------ ------------------------ > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] --------------------MESGNVS---------------------SSLF-------- --------------------------------GNVSTALRPEA--RLSA---ETRLLGWN VPPEELRHIPEHWLTYPEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSN ILVINLAFCDFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNA FIAYDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPE GYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQA KKMNVESL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RSNVDKNKETAEIRIAKAAITICFLFF CSWTPYGVMSLIGAF---GDKT-LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ KRCPWL--ALNEK-APESS--AVASTST-TQEPQQT---------------TAA------ ------------------------------------------------------------ ------------------------ > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 --------------------MEYHNVS---------------------SVL--------- --------------------------------GNVSSVLRPDA--RLSA---ESRLLGWN VPPDELRHIPEHWLIYPEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSN ILVINLAFCDFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNA FIAYDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPE GYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQA KKMNVDSL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RSNVDKSKEAAEIRIAKAAITICFLFF ASWTPYGVMSLIGAF---GDKT-LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQ KRCPWL--AISEK-APESR--AAISTST-TQEQQQT---------------TAA------ ------------------------------------------------------------ ------------------------ > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] --------------------MEPLC----------------------------------- --------------------------------NASEPPLRPEA--R-SSGNGDLQFLGWN VPPDQIQYIPEHWLTQLEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSN MFVLNLAVFDLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNA AIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPE GYLTSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQA KKMNVESL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RSNVDKSKETAEIRIAKAAITICFLFF VSWTPYGVMSLIGAF---GDKS-LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQ KRCPWL--GVNEK-SGEIS--SAQSTTT-QEQQQTT---------------AA------- ------------------------------------------------------------ ------------------------ > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 --------------------MDALC----------------------------------- --------------------------------NASEPPLRPEA--RMSSGSDELQFLGWN VPPDQIQYIPEHWLTQLEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSN MFVLNLAVFDLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNA AIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPE GYLTSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQA KKMNVESL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RSNVDKSKETAEIRIAKAAITICFLFF VSWTPYGVMSLIGAF---GDKS-LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQ KRCPWL--GVNEK-SGEAS--SAQSTTT-QEQTQQT---------------SAA------ ------------------------------------------------------------ ------------------------ > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 --------------------MTNAT-G---------------------PQMAY-----YG --------------------------------AASMDFGYPE---GVSIVD--------F VRPEIKPYVHQHWYNYPPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPAN ILVVNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLC MISFDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFF-GWG-----NYILE GILDSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQA KKMNVSTL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RS-NEADAQRAEIRIAKTALVNVSLWF ICWTPYALISLKGVM---GDTS-GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAIT QHLPWF--CVHET-ETKSN--DDSQSNS-TVAQDKA------------------------ ------------------------------------------------------------ ------------------------ > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 --------------------MANVT-G---------------------PQMAF-----YG --------------------------------SGAATFGYPE---GMTVAD--------F VPDRVKHMVLDHWYNYPPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPAN MLIVNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLC MISFDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFF-GWG-----SYTLE GILDSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQA KKMNVTNL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RS-NEAETQRAEIRIAKTALVNVSLWF ICWTPYAAITIQGLL---GNAE-GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAIT QHLPWF--CVHEK-DPNDV--EENQSSN-TQTQEKS------------------------ ------------------------------------------------------------ ------------------------ > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] MES--------------FAVAAAQL-G---------------------PHFA-------- ----------------------------------PLS--------NGSVVD--------K VTPDMAHLISPYWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPAN LLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMC MISLDRYQVIVKGMAGR-PMTIPLALGKM---------------------------YVPE GNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQA KKMNVKSL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RS-SEDAEKSAEGKLAKVALVTITLWF MAWTPYLVINCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK EKCPCC--VFGKV-DDGKS--SDAQSQA-TASEAES------KA---------------- ------------------------------------------------------------ ------------------------ > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] MES--------------FAVAAAQL-G---------------------PHFA-------- ----------------------------------PLS--------NGSVVD--------K VTPDMAHLISPYWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPAN LLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMC MISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAF-GWS-----RYVPE GNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQA KKMNVKSL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RS-SEDAEKSAEGKLAKVALVTITLWF MAWTPYLVINCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK EKCPCC--VFGKV-DDGKS--SDAQSQA-TASEAES------KA---------------- ------------------------------------------------------------ ------------------------ > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' MDS--------------FAAVATQL-G---------------------PQFA-------- ----------------------------------APS--------NGSVVD--------K VTPDMAHLISPYWDQFPAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPAN LLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMC MISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVF-GWS-----RYVPE GNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQA KKMNVKSL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RS-SEDADKSAEGKLAKVALVTISLWF MAWTPYLVINCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALK EKCPCC--VFGKV-DDGKS--SEAQSQA-TTSEAES------KA---------------- ------------------------------------------------------------ ------------------------ > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] MERSHL---------PETPFDLAHS-G---------------------PRFQ-------- ----------------------------------AQSSG------NGSVLD--------N VLPDMAHLVNPYWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPAN LLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMC MIAFDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLI-GWS-----AYVPE GNLTACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQA KKMNVKSL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RS-SEDCDKSAEGKLAKVALTTISLWF MAWTPYLVICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLK EKCPMC--VFGNT-DEPKP--DAPASDTETTSEADS------KA---------------- ------------------------------------------------------------ ------------------------ > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 MERSLL---------PEPPLAMALL-G---------------------PRFE-------- ----------------------------------AQTGG------NRSVLD--------N VLPDMAPLVNPHWSRFAPMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPAN LLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMC MIAFDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLI-GWS-----SYVPE GNLTACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQA KKMNVKSL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RS-SEDCDKSAENKLAKVALTTISLWF MAWTPYLIICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLK EKCPMC--VCGTT-DEPKP--DAPPSDTETTSEAES------KD---------------- ------------------------------------------------------------ ------------------------ > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] --------------------MIAVS-G---------------------PSYE-------- ----------------------------------AFSYGGQARFNNQTVVD--------K VPPDMLHLIDANWYQYPPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSN LFVINLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMT MIAFDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMF-GWN-----RYVPE GNMTACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQA KKMNVASL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RS-SENQNTSAECKLAKVALMTISLWF MAWTPYLVINFSGIF---NL-V-KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALF AKFPSL--AC-AA-EPSSD--AVSTTSG-TTTVTDN------EKS------NA------- ------------------------------------------------------------ ------------------------ > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] ----------------------MAN-Q---------------------LSYS-------- ----------------------------------SLGWPYQP---NASVVD--------T MPKEMLYMIHEHWYAFPPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTN LLVVNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMV MITLDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFF-GWS-----RYVPE GNLTSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQA KKMNVASL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RANADQQKQSAECRLAKVAMMTVGLWF MAWTPYLIISWAGVF---SSGT-RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALY QRFPSL--ACGSG-ESGSD--VKSEASA-TTTMEEK------PKI------PEA------ ------------------------------------------------------------ ------------------------ > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] ----------------------MVE-S---------------------TTLV-------- ----------------------------------NQTWWY-----NPTV----------- -------DIHPHWAKFDPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPAN MFIINLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMA MISIDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVF-NWG-----AYVPE GILTSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMA KRLNAKEL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RK-AQ-AGASAEMKLAKISMVIITQFM LSWSPYAIIALLAQF---GPAE-WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQ TTFPWLLTCCQFD-EKECE--DANDAEE-EVVASER----GGESR------DAAQMKEMM AMMQKMQAQQAAYQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQ GAPPQVEAPQGAPPQGVDNQAYQA > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] -----------------------MG-R---------------------DLRD-------- ----------------------------------NETWWY-----NPSI----------- -------VVHPHWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPAN MFIINLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMA MISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIF-GWG-----AYTLE GVLCNCSFDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMA KRLNAKEL---------------------------------------------------- ------------------------------------------------------------ ---------------------------------RK-AQ-AGANAEMRLAKISIVIVSQFL LSWSPYAVVALLAQF---GPLE-WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAIS QTFPWVLTCCQFD-DKETE--DDKDAET-EIPAGES--SDAAPSA------DAAQMKEMM AMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQ GAPP------AAPPQGVDNQAYQA > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra M-------------------MDVNSSGRPDLY----GHLRSFL--LPEVGRGLPDLSPDG ------------GADPVAGSWAPHLLS---EVTASPA---PTW----------------D APPDNASGCGEQI----NYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSN YLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLC VISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVND DKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG --------------FPRVEPDSVIALNG-------------------------------- ------------------------------IVKLQKE-------------------VEEC AN------------------LSRLLKH------ER-KNISIFKREQKAATTLGIIVGAFT VCWLPFFLLSTARPFICGTSCS-CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYR SLLQCQ--YRNIN-RKLSA----AGMHE-ALKLAER------PERPEFVLQNADYCRK-- ------------------------------------------------------------ -------------------KGHDS > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] ------------------------------------------------------------ ---------------------MPHLLSGFLEVTASPA---PTW----------------D APPDNVSGCGEQI----NYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSN YLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLC VISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVND DKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG --------------FPRVQPESVISLNG-------------------------------- ------------------------------VVKLQKE-------------------VEEC AN------------------LSRLLKH------ER-KNISIFKREQKAATTLGIIVGAFT VCWLPFFLLSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSR SLLQCQ--YRNIN-RKLSA----AGMHE-ALKLAER------PERSEFVLQNSDHCGK-- ------------------------------------------------------------ -------------------KGHDT > 31=p A47425 serotonin receptor 5HT-7 - rat ------------------------------------------------------------ ---------------------MPHLLSGFLEVTASPA---PTW----------------D APPDNVSGCGEQI----NYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSN YLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLC VISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLF-GWA-----QNVND DKVCLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG --------------FPRVQPESVISLNG-------------------------------- ------------------------------VVKLQKE-------------------VEEC AN------------------LSRLLKH------ER-KNISIFKREQKAATTLGIIVGAFT VCWLPFFLLSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYR SLLQCQ--YRNIN-RKLSA----AGMHE-ALKLAER------PERSEFVLQNSDHCGK-- ------------------------------------------------------------ -------------------KGHDT > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] --------------------MDVLSPG-------------------------------QG --------------------------N---NTTSPPA---PFE----------------- -TGGNTTGIS-------DVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVAN YLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLC AIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTP---EDRSD PDACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKV EKTGADTRHGASPAPQPKK-----SVNGE--SGSRNWRLGVESKAGGALCA--------- ------NGAVRQGD---------------------------------DGAALEVIEVHRV GNSKEHLPLPSEAG--PTPCAPASFERKNERNAEA-KRKMALARERKTVKTLGIIMGTFI LCWLPFFIVALVLPF---CESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK KIIKCK--FCRQ------------------------------------------------ ------------------------------------------------------------ ------------------------ > 33=p A35181 serotonin receptor class 1A - rat --------------------MDVFSFG-------------------------------QG --------------------------N---NTTASQE---PFG----------------- -TGGNVTSIS-------DVTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVAN YLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLC AIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPML-GWRTP---EDRSD PDACTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKV EKKGAGTSLGTSSAPPPKK-----SLNGQ--PGSGDWRRCAENRAVGTPCT--------- ------NGAVRQGD---------------------------------DEATLEVIEVHRV GNSKEHLPLPSESG--SNSYAPACLERKNERNAEA-KRKMALARERKTVKTLGIIMGTFI LCWLPFFIVALVLPF---CESSCHMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFK KIIKCK--FCRR------------------------------------------------ ------------------------------------------------------------ ------------------------ > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] --------------------MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG LVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---------- -TDDRYWSLT-------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVAN YLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLV AIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDP--NNDPDK TGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQM TKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNR AKKLPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQC NNGKK-------------------ISSNDTPYSRT-REKLELKRERKAARTLAIITGAFL ICWLPFFIIALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ KILFGK--YRRGH----------------------------------------------- ------------------------------------------------------------ -------------------R---- > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail --------------------MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG LVTSDFNDSYGLTGQFINGSHSSRSRD---NASANDT--------SATNM---------- -TDDRYWSLT-------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVAN YLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLV AIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLF-GWRDP--NNDPDK TGTCIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQM TKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNR AKKLPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQC NNGKK-------------------ISSNDTPYSRT-REKLELKRERKAARTLAIITGAFL ICWLPFFIIALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQ KILFGK--YRRGH----------------------------------------------- ------------------------------------------------------------ -------------------R---- > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi --------------------MEGAE-GQEELD-------------WEALYLRLP------ -------------------------LQ---NCSWNSTGWEPNW--NVTVV---------- -PNTTWWQASAPFDT--PAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAAN NLILSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLV AIALDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLL-GWKDPDWNQRVSE DLRCVVSQDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGAT ARGGVG--------PPPV------------------------------------------ ----PAGGALVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPE---KQSC ANGLEADPPTTGYGAVAAAYYPSLVRR------KP-KEAADSKRERKAAKTLAIITGAFV ACWLPFFVLAILVPT---CDCE--VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQ RLLCGR--RVRRR----------------------------------------------- ------------------------------------------------------------ -------------------RAPQ-