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annotate tool_dependencies.xml @ 18:075ef42d1ce5 draft

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Bugfix in kalign for very diverse read lengths.
author nick
date Thu, 02 Nov 2017 15:46:18 -0400
parents 91170668e6b4
children e5d1d90c099b
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548c63893c70 planemo upload for repository https://github.com/galaxyproject/dunovo commit b'fcd6f371638bc29da6dbe22f939f7a5a7f360481\n'-dirty
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="bowtie2" version="2.2.5">
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4 <repository changeset_revision="f5582ac5ba3c" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="samtools" version="0.1.18">
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7 <repository changeset_revision="f499719dad6e" name="package_samtools_0_1_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="mafft" version="7.221">
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10 <repository changeset_revision="dd4a533a0e3c" name="mafft" owner="rnateam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="networkx" version="1.10">
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91170668e6b4 Temporary fix for networkx dependency for conda.
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13 <repository changeset_revision="3469a6858fd4" name="package_networkx_1_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="dunovo" version="2.0.8">
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16 <install version="1.0">
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17 <actions>
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18 <action sha256sum="4c105e29eff271b9e32f12c5d2862b717ba960981f4820dae26e159e2a0ed33d" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v2.0.8.tar.gz</action>
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19 <action type="shell_command">make</action>
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20 <action type="move_directory_files">
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21 <source_directory>.</source_directory>
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22 <destination_directory>$INSTALL_DIR</destination_directory>
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23 </action>
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24 <action type="set_environment">
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25 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
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26 </action>
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27 <!-- Note: This does not install the submodules.
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28 Functionality they provide will not be available. -->
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29 </actions>
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30 </install>
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31 </package>
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32 </tool_dependency>