Mercurial > repos > nick > dunovo
changeset 7:bfc93db38735 draft
planemo upload for repository https://github.com/galaxyproject/dunovo commit b'7a4153c8f0f37ba6f3753d7bca8b0f566b26a1e9\n'-dirty
| author | nick |
|---|---|
| date | Thu, 17 Aug 2017 12:23:40 -0400 |
| parents | 1534fb45ab54 |
| children | 048ef52bb20e |
| files | align_families.xml correct_barcodes.xml dunovo.xml make_families.xml tool_dependencies.xml |
| diffstat | 5 files changed, 8 insertions(+), 8 deletions(-) [+] |
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--- a/align_families.xml Thu Aug 17 07:17:00 2017 -0400 +++ b/align_families.xml Thu Aug 17 12:23:40 2017 -0400 @@ -3,7 +3,7 @@ <description>of duplex sequencing reads</description> <requirements> <requirement type="package" version="7.221">mafft</requirement> - <requirement type="package" version="0.7.4">dunovo</requirement> + <requirement type="package" version="0.7.5">dunovo</requirement> <!-- TODO: require Python 2.7 --> </requirements> <command detect_errors="exit_code">align_families.py --test --galaxy $phone -p \${GALAXY_SLOTS:-1} '$input' > '$output'
--- a/correct_barcodes.xml Thu Aug 17 07:17:00 2017 -0400 +++ b/correct_barcodes.xml Thu Aug 17 12:23:40 2017 -0400 @@ -5,7 +5,7 @@ <requirement type="package" version="2.2.5">bowtie2</requirement> <requirement type="package" version="0.1.18">samtools</requirement> <requirement type="package" version="1.9">networkx</requirement> - <requirement type="package" version="0.7.4">dunovo</requirement> + <requirement type="package" version="0.7.5">dunovo</requirement> <!-- TODO: require Python 2.7 --> </requirements> <command detect_errors="exit_code"><![CDATA[
--- a/dunovo.xml Thu Aug 17 07:17:00 2017 -0400 +++ b/dunovo.xml Thu Aug 17 12:23:40 2017 -0400 @@ -2,7 +2,7 @@ <tool id="dunovo" name="Du Novo: Make consensus reads" version="0.7"> <description>from duplex sequencing alignments</description> <requirements> - <requirement type="package" version="0.7.4">dunovo</requirement> + <requirement type="package" version="0.7.5">dunovo</requirement> <!-- TODO: require Python 2.7 --> </requirements> <command detect_errors="exit_code"><![CDATA[
--- a/make_families.xml Thu Aug 17 07:17:00 2017 -0400 +++ b/make_families.xml Thu Aug 17 12:23:40 2017 -0400 @@ -2,7 +2,7 @@ <tool id="make_families" name="Du Novo: Make families" version="0.7.1"> <description>of duplex sequencing reads</description> <requirements> - <requirement type="package" version="0.7.4">dunovo</requirement> + <requirement type="package" version="0.7.5">dunovo</requirement> </requirements> <!-- TODO: Add dependency on coreutils to get paste? --> <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' > '$output'
--- a/tool_dependencies.xml Thu Aug 17 07:17:00 2017 -0400 +++ b/tool_dependencies.xml Thu Aug 17 12:23:40 2017 -0400 @@ -12,10 +12,10 @@ <package name="networkx" version="1.9"> <repository changeset_revision="2ca57555a756" name="package_networkx_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="dunovo" version="0.7.4"> + <package name="dunovo" version="0.7.5"> <install version="1.0"> <actions> - <action sha256sum="eb361939b1321c289bb8a4a8db676d24bdee95debcf8100c8ad9425dee90cb8e" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v0.7.4.tar.gz</action> + <action sha256sum="76f6c54d4a79d9c0d2abe3efd4c23d9ba496debb3087cafecaec53fe8879474b" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v0.7.5.tar.gz</action> <action type="shell_command">make</action> <action type="move_directory_files"> <source_directory>.</source_directory> @@ -24,8 +24,8 @@ <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> </action> - <!-- Note: This does not install the submodules. The current wrapper doesn't use any of the - functionality the submodules provide, though. --> + <!-- Note: This does not install the submodules. + Functionality they provide will not be available. --> </actions> </install> </package>