changeset 7:bfc93db38735 draft

planemo upload for repository https://github.com/galaxyproject/dunovo commit b'7a4153c8f0f37ba6f3753d7bca8b0f566b26a1e9\n'-dirty
author nick
date Thu, 17 Aug 2017 12:23:40 -0400
parents 1534fb45ab54
children 048ef52bb20e
files align_families.xml correct_barcodes.xml dunovo.xml make_families.xml tool_dependencies.xml
diffstat 5 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/align_families.xml	Thu Aug 17 07:17:00 2017 -0400
+++ b/align_families.xml	Thu Aug 17 12:23:40 2017 -0400
@@ -3,7 +3,7 @@
   <description>of duplex sequencing reads</description>
   <requirements>
     <requirement type="package" version="7.221">mafft</requirement>
-    <requirement type="package" version="0.7.4">dunovo</requirement>
+    <requirement type="package" version="0.7.5">dunovo</requirement>
     <!-- TODO: require Python 2.7 -->
   </requirements>
   <command detect_errors="exit_code">align_families.py --test --galaxy $phone -p \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
--- a/correct_barcodes.xml	Thu Aug 17 07:17:00 2017 -0400
+++ b/correct_barcodes.xml	Thu Aug 17 12:23:40 2017 -0400
@@ -5,7 +5,7 @@
     <requirement type="package" version="2.2.5">bowtie2</requirement>
     <requirement type="package" version="0.1.18">samtools</requirement>
     <requirement type="package" version="1.9">networkx</requirement>
-    <requirement type="package" version="0.7.4">dunovo</requirement>
+    <requirement type="package" version="0.7.5">dunovo</requirement>
     <!-- TODO: require Python 2.7 -->
   </requirements>
   <command detect_errors="exit_code"><![CDATA[
--- a/dunovo.xml	Thu Aug 17 07:17:00 2017 -0400
+++ b/dunovo.xml	Thu Aug 17 12:23:40 2017 -0400
@@ -2,7 +2,7 @@
 <tool id="dunovo" name="Du Novo: Make consensus reads" version="0.7">
   <description>from duplex sequencing alignments</description>
   <requirements>
-    <requirement type="package" version="0.7.4">dunovo</requirement>
+    <requirement type="package" version="0.7.5">dunovo</requirement>
     <!-- TODO: require Python 2.7 -->
   </requirements>
   <command detect_errors="exit_code"><![CDATA[
--- a/make_families.xml	Thu Aug 17 07:17:00 2017 -0400
+++ b/make_families.xml	Thu Aug 17 12:23:40 2017 -0400
@@ -2,7 +2,7 @@
 <tool id="make_families" name="Du Novo: Make families" version="0.7.1">
   <description>of duplex sequencing reads</description>
   <requirements>
-    <requirement type="package" version="0.7.4">dunovo</requirement>
+    <requirement type="package" version="0.7.5">dunovo</requirement>
   </requirements>
   <!-- TODO: Add dependency on coreutils to get paste? -->
   <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output'
--- a/tool_dependencies.xml	Thu Aug 17 07:17:00 2017 -0400
+++ b/tool_dependencies.xml	Thu Aug 17 12:23:40 2017 -0400
@@ -12,10 +12,10 @@
   <package name="networkx" version="1.9">
     <repository changeset_revision="2ca57555a756" name="package_networkx_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>
-  <package name="dunovo" version="0.7.4">
+  <package name="dunovo" version="0.7.5">
     <install version="1.0">
       <actions>
-        <action sha256sum="eb361939b1321c289bb8a4a8db676d24bdee95debcf8100c8ad9425dee90cb8e" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v0.7.4.tar.gz</action>
+        <action sha256sum="76f6c54d4a79d9c0d2abe3efd4c23d9ba496debb3087cafecaec53fe8879474b" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v0.7.5.tar.gz</action>
         <action type="shell_command">make</action>
         <action type="move_directory_files">
           <source_directory>.</source_directory>
@@ -24,8 +24,8 @@
         <action type="set_environment">
           <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
         </action>
-        <!-- Note: This does not install the submodules. The current wrapper doesn't use any of the
-        functionality the submodules provide, though. -->
+        <!-- Note: This does not install the submodules.
+        Functionality they provide will not be available. -->
       </actions>
     </install>
   </package>