Mercurial > repos > nick > allele_counts_1
changeset 6:f6d9742c1da0
fixed error on decimal variant counts
author | nick |
---|---|
date | Thu, 30 May 2013 13:49:37 -0400 |
parents | fd7ae393d5b5 |
children | 34892857567b |
files | allele-counts.py |
diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/allele-counts.py Wed May 29 11:24:56 2013 -0400 +++ b/allele-counts.py Thu May 30 13:49:37 2013 -0400 @@ -200,7 +200,7 @@ fail("Error in input VCF: variant data not strand-specific. " +"Failed on line:\n"+line) try: - variant_counts[variant] = int(reads) + variant_counts[variant] = int(float(reads)) except ValueError, e: continue