# HG changeset patch
# User nick
# Date 1369936177 14400
# Node ID f6d9742c1da09224a9d2531fd439903772d68c4c
# Parent  fd7ae393d5b5e9d25efcebe73aa61fa4b58bdfaf
fixed error on decimal variant counts

diff -r fd7ae393d5b5 -r f6d9742c1da0 allele-counts.py
--- a/allele-counts.py	Wed May 29 11:24:56 2013 -0400
+++ b/allele-counts.py	Thu May 30 13:49:37 2013 -0400
@@ -200,7 +200,7 @@
         fail("Error in input VCF: variant data not strand-specific. "
           +"Failed on line:\n"+line)
       try:
-        variant_counts[variant] = int(reads)
+        variant_counts[variant] = int(float(reads))
       except ValueError, e:
         continue